TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

被引：1572

作者：

Pertea, G ^{[1
]}

Huang, XQ

Liang, F

Antonescu, V

Sultana, R

Karamycheva, S

Lee, Y

White, J

Cheung, F

Parvizi, B

Tsai, J

Quackenbush, J

机构：

[1] Inst Genom Res, Rockville, MD 20850 USA

[2] Iowa State Univ Sci & Technol, Dept Comp Sci, Ames, IA 50011 USA

来源：

BIOINFORMATICS | 2003年 / 19卷 / 05期

关键词：

D O I：

10.1093/bioinformatics/btg034

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to produce longer, more complete consensus sequences. The system can run on multi-CPU architectures including SMP and PVM.

引用

页码：651 / 652

页数：2

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