Estimates of methyl 13C and 1H CSA values (Δσ) in proteins from cross-correlated spin relaxation

被引:21
作者
Tugarinov, V
Scheurer, C
Brüschweiler, R
Kay, LE
机构
[1] Univ Toronto, Prot Engn Network Ctr Excellence, Dept Med Genet, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Prot Engn Network Ctr Excellence, Dept Biochem & Chem, Toronto, ON M5S 1A8, Canada
[3] Tech Univ Munich, Lehrstuhl Theoret Chem, D-85748 Garching, Germany
[4] Clark Univ, Gustaf H Carlson Sch Chem, Worcester, MA 01610 USA
基金
加拿大健康研究院; 美国国家科学基金会;
关键词
DFT; H-1; C-13 methyl CSA; methyl groups;
D O I
10.1007/s10858-004-4349-x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Simple pulse schemes are presented for the measurement of methyl C-13 and H-1 CSA values from H-1 - C-13 dipole/C-13 CSA and H-1 - C-13 dipole/H-1 CSA cross-correlated relaxation. The methodology is applied to protein L and malate synthase G. Average C-13 CSA values are considerably smaller for Ile than Leu/Val ( 17 vs. 25 ppm) and are in good agreement with previous solid state NMR studies of powders of amino acids and dipeptides and in reasonable agreement with quantum-chemical DFT calculations of methyl carbon CSA values in peptide fragments. Small averaged H-1 CSA values on the order of 1 ppm are measured, consistent with a solid state NMR determination of the methyl group H-1 CSA in dimethylmalonic acid.
引用
收藏
页码:397 / 406
页数:10
相关论文
共 59 条
[1]   ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[2]  
AHLRICHS R, 1995, METHODS TECHNIQUES C
[3]   Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase [J].
Cornilescu, G ;
Marquardt, JL ;
Ottiger, M ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (27) :6836-6837
[4]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[5]  
Duncan T. M., 1990, COMPILATION CHEM SHI
[6]   Production and incorporation of N-15, C-13, H-2 (H-1-delta 1 methyl) isoleucine into proteins for multidimensional NMR studies [J].
Gardner, KH ;
Kay, LE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (32) :7599-7600
[7]   Global folds of highly deuterated, methyl-protonated proteins by multidimensional NMR [J].
Gardner, KH ;
Rosen, MK ;
Kay, LE .
BIOCHEMISTRY, 1997, 36 (06) :1389-1401
[8]   Solution NMR studies of a 42 KDa Escherichia coli maltose binding protein β-cyclodextrin complex:: Chemical shift assignments and analysis [J].
Gardner, KH ;
Zhang, XC ;
Gehring, K ;
Kay, LE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (45) :11738-11748
[9]   OPTIMIZATION OF GAUSSIAN-TYPE BASIS-SETS FOR LOCAL SPIN-DENSITY FUNCTIONAL CALCULATIONS .1. BORON THROUGH NEON, OPTIMIZATION TECHNIQUE AND VALIDATION [J].
GODBOUT, N ;
SALAHUB, DR ;
ANDZELM, J ;
WIMMER, E .
CANADIAN JOURNAL OF CHEMISTRY, 1992, 70 (02) :560-571
[10]   A robust and cost-effective method for the production of Val, Leu, Ile (δ1) methyl-protonated 15N-, 13C-, 2H-labeled proteins [J].
Goto, NK ;
Gardner, KH ;
Mueller, GA ;
Willis, RC ;
Kay, LE .
JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (04) :369-374