Interactive electron-density map interpretation:: from INTER to O

被引:74
作者
Jones, TA [1 ]
机构
[1] Uppsala Univ, BMC, Dept Cell & Mol Biol, S-75124 Uppsala, Sweden
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2004年 / 60卷
关键词
D O I
10.1107/S0907444904023509
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A short review of the author's computer-graphics developments since 1976 is presented. Some of the major developments in these programs are reviewed and a description is provided of some of the more recent tools that can be used for electron-density map interpretation. These tools include a secondary-structure template-building system that works in conjunction with a new sequence-decoration system.
引用
收藏
页码:2115 / 2125
页数:11
相关论文
共 39 条
[1]   METHODS AND PROGRAMS FOR DIRECT-SPACE EXPLOITATION OF GEOMETRIC REDUNDANCIES [J].
BRICOGNE, G .
ACTA CRYSTALLOGRAPHICA SECTION A, 1976, 32 (SEP1) :832-847
[2]   SLOW-COOLING PROTOCOLS FOR CRYSTALLOGRAPHIC REFINEMENT BY SIMULATED ANNEALING [J].
BRUNGER, AT ;
KRUKOWSKI, A ;
ERICKSON, JW .
ACTA CRYSTALLOGRAPHICA SECTION A, 1990, 46 :585-593
[3]   CRYSTALLOGRAPHIC STUDIES ON A FAMILY OF CELLULAR LIPOPHILIC TRANSPORT PROTEINS - REFINEMENT OF P2 MYELIN PROTEIN AND THE STRUCTURE DETERMINATION AND REFINEMENT OF CELLULAR RETINOL-BINDING PROTEIN IN COMPLEX WITH ALL-TRANS-RETINOL [J].
COWAN, SW ;
NEWCOMER, ME ;
JONES, TA .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 230 (04) :1225-1246
[4]   Modified phased translation functions and their application to molecular-fragment location [J].
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :750-756
[5]   CRYSTALLOGRAPHIC REFINEMENT OF STRUCTURE OF BOVINE PANCREATIC TRYPSIN-INHIBITOR AT 1.5 A RESOLUTION [J].
DEISENHOFER, J ;
STEIGEMANN, W .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1975, 31 (JAN15) :238-250
[8]   3-DIMENSIONAL PATTERN-RECOGNITION - APPROACH TO AUTOMATED INTERPRETATION OF ELECTRON-DENSITY MAPS OF PROTEINS [J].
GREER, J .
JOURNAL OF MOLECULAR BIOLOGY, 1974, 82 (03) :279-301
[9]   AUTOMATED INTERPRETATION OF ELECTRON-DENSITY MAPS OF PROTEINS - DERIVATION OF ATOMIC COORDINATES FOR MAIN CHAIN [J].
GREER, J .
JOURNAL OF MOLECULAR BIOLOGY, 1976, 100 (04) :427-458
[10]  
HENDRICKSON WA, 1980, COMPUTING CRYSTALLOG