VISUALIZING YEAST CHROMOSOMES AND NUCLEAR ARCHITECTURE

被引:57
作者
Meister, Peter [1 ]
Gehlen, Lutz R. [1 ]
Varela, Elisa [1 ]
Kalck, Veronique [1 ]
Gasser, Susan M. [1 ]
机构
[1] Friedrich Miescher Inst Biomed Res, Basel, Switzerland
来源
METHODS IN ENZYMOLOGY, VOL 470: GUIDE TO YEAST GENETICS:: FUNCTIONAL GENOMICS, PROTEOMICS, AND OTHER SYSTEMS ANALYSIS, 2ND EDITION | 2010年 / 470卷
关键词
SACCHAROMYCES-CEREVISIAE; BUDDING YEAST; DYNAMICS; PROTEINS; REVEALS; COLOCALIZATION; ORGANIZATION; REPLICATION; SEPARATION; TELOMERES;
D O I
10.1016/S0076-6879(10)70021-5
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We describe here optimized protocols for tagging genomic DNA sequences with bacterial operator sites to enable visualization of specific loci in living budding yeast cells. Quantitative methods for the analysis of locus position relative to the nuclear center or nuclear pores, the analysis of chromatin dynamics and the relative position of tagged loci to other nuclear landmarks are described. Methods for accurate immunolocalization of nuclear proteins without loss of three-dimensional structure, in combination with fluorescence in situ hybridization, are also presented. These methods allow a robust analysis of subnuclear organization of both proteins and DNA in intact yeast cells.
引用
收藏
页码:535 / 567
页数:33
相关论文
共 31 条
[1]   Visualizing chromosome dynamics with GFP [J].
Belmont, AS .
TRENDS IN CELL BIOLOGY, 2001, 11 (06) :250-257
[2]  
Berg H. C., 1993, Random Walks in Biology
[3]   High-resolution statistical mapping reveals gene territories in live yeast [J].
Berger, Axel B. ;
Cabal, Ghislain G. ;
Fabre, Emmanuelle ;
Duong, Tarn ;
Buc, Henri ;
Nehrbass, Ulf ;
Olivo-Marin, Jean-Christophe ;
Gadal, Olivier ;
Zimmer, Christophe .
NATURE METHODS, 2008, 5 (12) :1031-1037
[4]   ANOMALOUS DIFFUSION IN DISORDERED MEDIA - STATISTICAL MECHANISMS, MODELS AND PHYSICAL APPLICATIONS [J].
BOUCHAUD, JP ;
GEORGES, A .
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 1990, 195 (4-5) :127-293
[5]   Mating type-dependent constraints on the mobility of the left arm of yeast chromosome III [J].
Bressan, DA ;
Vazquez, J ;
Haber, JE .
JOURNAL OF CELL BIOLOGY, 2004, 164 (03) :361-371
[6]   Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization [J].
Bystricky, K ;
Laroche, T ;
van Houwe, G ;
Blaszczyk, M ;
Gasser, SM .
JOURNAL OF CELL BIOLOGY, 2005, 168 (03) :375-387
[7]  
GEHLEN LR, 2009, THESIS U BASEL
[8]  
Gotta M, 1999, METHOD ENZYMOL, V304, P663
[9]   The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae [J].
Gotta, M ;
Laroche, T ;
Formenton, A ;
Maillet, L ;
Scherthan, H ;
Gasser, SM .
JOURNAL OF CELL BIOLOGY, 1996, 134 (06) :1349-1363
[10]   CHROMOSOME CONDENSATION AND SISTER-CHROMATID PAIRING IN BUDDING YEAST [J].
GUACCI, V ;
HOGAN, E ;
KOSHLAND, D .
JOURNAL OF CELL BIOLOGY, 1994, 125 (03) :517-530