Tuning ion coordination architectures to enable selective partitioning

被引:135
作者
Varma, Sameer [1 ]
Rempe, Susan B. [1 ]
机构
[1] Sandia Natl Labs, Computat Biosci Dept, Albuquerque, NM 87185 USA
关键词
INITIO MOLECULAR-DYNAMICS; QUASI-CHEMICAL THEORY; POTASSIUM CHANNELS; FREE-ENERGY; K+ CHANNEL; SIMULATIONS; HYDRATION; WATER; KCSA; NA+;
D O I
10.1529/biophysj.107.107482
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
K+ ions seemingly permeate K-channels rapidly because channel binding sites mimic coordination of K+ ions in water. Highly selective ion discrimination should occur when binding sites form rigid cavities that match K+, but not the smaller Na+, ion size or when binding sites are composed of specific chemical groups. Although conceptually attractive, these views cannot account for critical observations: 1), K+ hydration structures differ markedly from channel binding sites; 2), channel thermal fluctuations can obscure sub-angstrom ngstrom differences in ion sizes; and 3), chemically identical binding sites can exhibit diverse ion selectivities. Our quantum mechanical studies lead to a novel paradigm that reconciles these observations. We. nd that K- channels utilize a "phase- activated'' mechanism where the local environment around the binding sites is tuned to sustain high coordination numbers (>6) around K+ ions, which otherwise are rarely observed in liquid water. When combined with the field strength of carbonyl ligands, such high coordinations create the electrical scenario necessary for rapid and selective K+ partitioning. Specific perturbations to the local binding site environment with respect to strongly selective K- channels result in altered K+/ Na+ selectivities.
引用
收藏
页码:1093 / 1099
页数:7
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