Fourier and wavelet transform analysis, a tool for visualizing regular patterns in DNA sequences

被引：88

作者：

Dodin, G ^{[1
]}

Vandergheynst, P

Levoir, P

Cordier, C

Marcourt, L

机构：

[1] Univ Denis Diderot, ITODYS, Associe CNRS, Paris, France

[2] Swiss Fed Inst Technol, Signal Proc Lab, CH-1015 Lausanne, Switzerland

来源：

JOURNAL OF THEORETICAL BIOLOGY | 2000年 / 206卷 / 03期

关键词：

D O I：

10.1006/jtbi.2000.2127

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

A correlation function that compares each base in a DNA sequence to its various neighbours and which is subsequently processed by Fourier and wavelet transforms has been developed. The procedure has been applied to sequences from the human chromosome 22, to nef genes from various HIV clones and to myosin heavy chain DNA. It permits to readily visualize regular features in DNA which are related to the stability of heteroduplexes formed upon strand slippage. (C) 2000 Academic Press.

引用

页码：323 / 326

页数：4

共 14 条

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