Variation of surface partition in GEPOL: effects on solvation free energy and free-energy profiles

被引:27
作者
Pomelli, CS
Tomasi, J
机构
[1] Dipartimento Chim & Chim Ind, I-56124 Pisa, Italy
[2] Scuola Normale Super Pisa, I-56126 Pisa, Italy
关键词
solvent effect; boundary elements method;
D O I
10.1007/s002140050300
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The problem of defining efficient strategies for partitioning the cavity surface in QM solvation procedures based on boundary elements methods is considered here. The GEPOL procedure to get the cavity surface, and its partition into tesserae is adopted as a starting point: a version with variable tesselation is presented. The procedure to build the new sphere tesselations is described and several different options to select the surface partition have been implemented. The effects of the variation of the surface partition on the free energy of solvation of several solutes are also presented. Two free energy of solvation profiles evaluated with several different cavity partitions are analysed. We find that a radius-driven tesselation for every sphere reduces the number and extension of the cavity artefacts.
引用
收藏
页码:34 / 43
页数:10
相关论文
共 13 条
[1]  
AMOVILLI C, IN PRESS ADV QUANTUM
[2]   ANALYTICAL DERIVATIVES FOR MOLECULAR SOLUTES .2. HARTREE-FOCK ENERGY FIRST-DERIVATIVE AND 2ND-DERIVATIVE WITH RESPECT TO NUCLEAR COORDINATES [J].
CAMMI, R ;
TOMASI, J .
JOURNAL OF CHEMICAL PHYSICS, 1994, 101 (05) :3888-3897
[3]   Ab initio study of solvated molecules: A new implementation of the polarizable continuum model [J].
Cossi, M ;
Barone, V ;
Cammi, R ;
Tomasi, J .
CHEMICAL PHYSICS LETTERS, 1996, 255 (4-6) :327-335
[4]  
Cramer C. S., 1996, SOLVENT EFFECTS CHEM, P1, DOI DOI 10.1007/0-306-46931-6_1
[5]   EVALUATION OF THE DISPERSION CONTRIBUTION TO THE SOLVATION ENERGY - A SIMPLE COMPUTATIONAL MODEL IN THE CONTINUUM APPROXIMATION [J].
FLORIS, F ;
TOMASI, J .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1989, 10 (05) :616-627
[6]  
Frisch M.J., 1995, GAUSSIAN 94
[7]  
MASSEY WS, 1967, ALGEBRAIC TOPOLOGY I, pCH1
[8]   GEPOL - AN IMPROVED DESCRIPTION OF MOLECULAR-SURFACES .3. A NEW ALGORITHM FOR THE COMPUTATION OF A SOLVENT-EXCLUDING SURFACE [J].
PASCUALAHUIR, JL ;
SILLA, E ;
TUNON, I .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1994, 15 (10) :1127-1138
[9]   ELECTROSTATIC INTERACTION OF A SOLUTE WITH A CONTINUUM - IMPROVED DESCRIPTION OF THE CAVITY AND OF THE SURFACE CAVITY BOUND CHARGE-DISTRIBUTION [J].
PASCUALAHUIR, JL ;
SILLA, E ;
TOMASI, J ;
BONACCORSI, R .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1987, 8 (06) :778-787
[10]   Ab initio study of the S(N)2 reaction CH3Cl+Cl-->Cl-+CH3Cl in supercritical water with the polarizable continuum model [J].
Pomelli, CS ;
Tomasi, J .
JOURNAL OF PHYSICAL CHEMISTRY A, 1997, 101 (19) :3561-3568