Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species

被引：77

作者：

Horvath, DP ^{[1
]}

Schaffer, R

West, M

Wisman, E

机构：

[1] USDA, Biosci Res Lab, ARS, Fargo, ND 58105 USA

[2] Hort Res, Auckland, New Zealand

[3] USDA, ARS, Ft Collins, CO 80525 USA

[4] Michigan State Univ, DOE, Plant Res Lab, E Lansing, MI 48824 USA

来源：

PLANT JOURNAL | 2003年 / 34卷 / 01期

关键词：

microarray; development; heterologous hybridization; growth;

D O I：

10.1046/j.1365-313X.2003.01706.x

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Expressed sequence tags (EST)-based microarrays are powerful tools for gene discovery and signal transduction studies in a small number of well-characterized species. To explore the usefulness of this technique for poorly characterized species, we have hybridized the 11 522-element Arabidopsis microarrays with labeled cDNAs from mature leaf and shoot apices from several different species. Expression of 23 to 47% of the genes on the array was detected, demonstrating that a large number of genes from distantly related species can be surveyed on Arabidopsis arrays. Differential expression of genes with known functions was indicative of the physiological state of the tissues tested. Genes involved in cell division, stress responses, and development were conserved and expressed preferentially in growing shoots.

引用

页码：125 / 134

页数：10

共 18 条

[1] Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].

Kaul, S ;

Koo, HL ;

Jenkins, J ;

Rizzo, M ;

Rooney, T ;

Tallon, LJ ;

Feldblyum, T ;

Nierman, W ;

Benito, MI ;

Lin, XY ;

Town, CD ;

Venter, JC ;

Fraser, CM ;

Tabata, S ;

Nakamura, Y ;

Kaneko, T ;

Sato, S ;

Asamizu, E ;

Kato, T ;

Kotani, H ;

Sasamoto, S ;

Ecker, JR ;

Theologis, A ;

Federspiel, NA ;

Palm, CJ ;

Osborne, BI ;

Shinn, P ;

Conway, AB ;

Vysotskaia, VS ;

Dewar, K ;

Conn, L ;

Lenz, CA ;

Kim, CJ ;

Hansen, NF ;

Liu, SX ;

Buehler, E ;

Altafi, H ;

Sakano, H ;

Dunn, P ;

Lam, B ;

Pham, PK ;

Chao, Q ;

Nguyen, M ;

Yu, GX ;

Chen, HM ;

Southwick, A ;

Lee, JM ;

Miranda, M ;

Toriumi, MJ ;

Davis, RW .

NATURE, 2000, 408 (6814) :796-815

[2]

Chang S. J., 1993, Plant Molecular Biology Reporter, V11, P113, DOI 10.1007/BF02670468

[3] Cluster analysis and display of genome-wide expression patterns [J].

Eisen, MB ;

Spellman, PT ;

Brown, PO ;

Botstein, D .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868

[4] Systematic changes in gene expression patterns following adaptive evolution in yeast [J].

Ferea, TL ;

Botstein, D ;

Brown, PO ;

Rosenzweig, RF .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (17) :9721-9726

[5] PATTERNS OF CELL-DIVISION REVEALED BY TRANSCRIPTIONAL REGULATION OF GENES DURING THE CELL-CYCLE IN PLANTS [J].

FOBERT, PR ;

COEN, ES ;

MURPHY, GJP ;

DOONAN, JH .

EMBO JOURNAL, 1994, 13 (03) :616-624

[6] Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants [J].

Fulton, TM ;

Van der Hoeven, R ;

Eannetta, NT ;

Tanksley, SD .

PLANT CELL, 2002, 14 (07) :1457-1467

[7] Microarray analysis of developing Arabidopsis seeds [J].

Girke, T ;

Todd, J ;

Ruuska, S ;

White, J ;

Benning, C ;

Ohlrogge, J .

PLANT PHYSIOLOGY, 2000, 124 (04) :1570-1581

[8] Molecular analysis of signals controlling dormancy and growth in underground adventitious buds of leafy spurge [J].

Horvath, DP ;

Chao, WS ;

Anderson, JV .

PLANT PHYSIOLOGY, 2002, 128 (04) :1439-1446

[9]

Horvath DP, 2002, WEED SCI, V50, P227, DOI 10.1614/0043-1745(2002)050[0227:AMATUR]2.0.CO

[10]

← 1 2 →