Adaptation of standard spreadsheet software for the analysis of DNA sequences

被引:11
作者
McEwan, NR
Gatherer, D
机构
[1] Scottish Agr Coll, Land Resources Dept, Soil Biol Unit, Aberdeen AB21 9TQ, Scotland
[2] Liverpool John Moores Univ, Sch Biomol Sci, Liverpool L3 3AF, Merseyside, England
关键词
D O I
10.2144/98241st07
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
This paper presents rise of spreadsheet software to derive various statistics on nucleotide and codon distribution and frequency from gene sequence data, including chi(2) tests and their derivatives, and proportion of nucleotides in the third position. The basic principles can be easily extended to other more complex functions. In addition, it can be used to translate a nucleic acid sequence into a protein sequence or to produce a codon usage table. This adaptation permits sequence analysis without expensive dedicated software and easy modification of the analysis according to the user's requirements. It is also ideal for introducing biological science students to the programming potential of spreadsheets.
引用
收藏
页码:131 / +
页数:6
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