The unfolding story of three-dimensional domain swapping

被引:191
作者
Rousseau, F
Schymkowitz, JWH
Itzhaki, LS
机构
[1] European Mol Biol Lab, D-69117 Heidelberg, Germany
[2] Univ Cambridge, Chem Lab, MRC, Ctr Prot Engn, Cambridge CB2 1EW, England
关键词
D O I
10.1016/S0969-2126(03)00029-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Three-dimensional domain swapping is the event by which a monomer exchanges part of its structure with identical monomers to form an oligomer where each subunit has a similar structure to the monomer. The accumulating number of observations of this phenomenon in crystal structures has prompted speculation as to its biological relevance. Domain swapping was originally proposed to be a mechanism for the emergence of oligomeric proteins and as a means for functional regulation, but also to be a potentially harmful process leading to misfolding and aggregation. We highlight experimental studies carried out within the last few years that have led to a much greater understanding of the mechanism of domain swapping and of the residue- and structure-specific features that facilitate the process. We discuss the potential biological implications of domain swapping in light of these findings.
引用
收藏
页码:243 / 251
页数:9
相关论文
共 75 条
[1]   Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations: implications for domain swapping [J].
Alonso, DOV ;
Alm, E ;
Daggett, V .
STRUCTURE, 2000, 8 (01) :101-110
[2]   Factors influencing the dimer to monomer transition of an antibody single-chain Fv fragment [J].
Arndt, KM ;
Müller, KM ;
Plückthun, A .
BIOCHEMISTRY, 1998, 37 (37) :12918-12926
[3]   CRYSTAL-STRUCTURE OF THE HUMAN CELL-CYCLE PROTEIN CKSHS1 - SINGLE-DOMAIN FOLD WITH SIMILARITY TO KINASE N-LOBE DOMAIN [J].
ARVAI, AS ;
BOURNE, Y ;
HICKEY, MJ ;
TAINER, JA .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 249 (05) :835-842
[4]   The domain-swapped dimer of cyanovirin-N is in a metastable folded state: Reconciliation of X-ray and NMR structures [J].
Barrientos, LG ;
Louis, JM ;
Botos, I ;
Mori, T ;
Han, ZZ ;
O'Keefe, BR ;
Boyd, MR ;
Wlodawer, A ;
Gronenborn, AM .
STRUCTURE, 2002, 10 (05) :673-686
[5]   X-RAY-ANALYSIS OF BETA-B2-CRYSTALLIN AND EVOLUTION OF OLIGOMERIC LENS PROTEINS [J].
BAX, B ;
LAPATTO, R ;
NALINI, V ;
DRIESSEN, H ;
LINDLEY, PF ;
MAHADEVAN, D ;
BLUNDELL, TL ;
SLINGSBY, C .
NATURE, 1990, 347 (6295) :776-780
[6]   DOMAIN SWAPPING - ENTANGLING ALLIANCES BETWEEN PROTEINS [J].
BENNETT, MJ ;
CHOE, S ;
EISENBERG, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (08) :3127-3131
[7]   3D DOMAIN SWAPPING - A MECHANISM FOR OLIGOMER ASSEMBLY [J].
BENNETT, MJ ;
SCHLUNEGGER, MP ;
EISENBERG, D .
PROTEIN SCIENCE, 1995, 4 (12) :2455-2468
[8]   Proline-dependent oligomerization with arm exchange [J].
Bergdoll, M ;
Remy, MH ;
Cagnon, C ;
Masson, JM ;
Dumas, P .
STRUCTURE, 1997, 5 (03) :391-401
[9]   Crystal structure and mutational analysis of the Saccharomyces cerevisiae cell cycle regulatory protein Cks1:: implications for domain swapping, anion binding and protein interactions [J].
Bourne, Y ;
Watson, MH ;
Arvai, AS ;
Bernstein, SL ;
Reed, SI ;
Tainer, JA .
STRUCTURE WITH FOLDING & DESIGN, 2000, 8 (08) :841-850
[10]   CRYSTAL-STRUCTURE OF THE CELL CYCLE-REGULATORY PROTEIN SUC1 REVEALS A BETA-HINGE CONFORMATIONAL SWITCH [J].
BOURNE, Y ;
ARVAI, AS ;
BERNSTEIN, SL ;
WATSON, MH ;
REED, SI ;
ENDICOTT, JE ;
NOBLE, ME ;
JOHNSON, LN ;
TAINER, JA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (22) :10232-10236