Topology models for 37 Saccharomyces cerevisiae membrane proteins based on C-terminal reporter fusions and predictions

被引:54
作者
Kim, H [1 ]
Melén, K [1 ]
von Heijne, G [1 ]
机构
[1] Stockholm Univ, Dept Biochem & Biophys, SE-10691 Stockholm, Sweden
关键词
D O I
10.1074/jbc.M300163200
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We provide experimentally based topology models for 37 integral membrane proteins from Saccharomyces cerevisiae. A C-terminal fusion to a dual Suc2/His4C topology reporter has been used to determine the location of the C terminus of each protein relative to the endoplasmic reticulum membrane, and this information is used in conjunction with theoretical topology prediction methods to arrive at a final topology model. We propose that this approach may be used to produce reliable topology models on a proteome-wide scale.
引用
收藏
页码:10208 / 10213
页数:6
相关论文
共 25 条
[1]  
Breeden LL, 1997, METHOD ENZYMOL, V283, P332
[2]  
CLAROS MG, 1994, COMPUT APPL BIOSCI, V10, P685
[3]   Membrane topology and function of Der3/Hrd1p as a ubiquitin-protein ligase (E3) involved in endoplasmic reticulum degradation [J].
Deak, PM ;
Wolf, DH .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (14) :10663-10669
[4]   A Bayesian system integrating expression data with sequence patterns for localizing proteins: Comprehensive application to the yeast genome [J].
Drawid, A ;
Gerstein, M .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 301 (04) :1059-1075
[5]   Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis [J].
Drew, D ;
Sjöstrand, D ;
Nilsson, J ;
Urbig, T ;
Chin, CN ;
de Gier, JW ;
von Heijne, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (05) :2690-2695
[6]   Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO) [J].
Dwight, SS ;
Harris, MA ;
Dolinski, K ;
Ball, CA ;
Binkley, G ;
Christie, KR ;
Fisk, DG ;
Issel-Tarver, L ;
Schroeder, M ;
Sherlock, G ;
Sethuraman, A ;
Weng, S ;
Botstein, D ;
Cherry, JM .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :69-72
[7]   Predicting subcellular localization of proteins based on their N-terminal amino acid sequence [J].
Emanuelsson, O ;
Nielsen, H ;
Brunak, S ;
von Heijne, G .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 300 (04) :1005-1016
[8]  
GOFFEAU A, 1997, NATURE S, V387, P1
[9]   C-TERMINAL SEQUENCES CAN INHIBIT THE INSERTION OF MEMBRANE-PROTEINS INTO THE ENDOPLASMIC-RETICULUM OF SACCHAROMYCES-CEREVISIAE [J].
GREEN, N ;
WALTER, P .
MOLECULAR AND CELLULAR BIOLOGY, 1992, 12 (01) :276-282
[10]   TRANSFORMATION OF INTACT YEAST-CELLS TREATED WITH ALKALI CATIONS [J].
ITO, H ;
FUKUDA, Y ;
MURATA, K ;
KIMURA, A .
JOURNAL OF BACTERIOLOGY, 1983, 153 (01) :163-168