ASSA, a program for three-dimensional rendering in solution scattering from biopolymers

被引：56

作者：

Kozin, MB

Volkov, VV

Svergun, DI

机构：

[1] Russian Acad Sci, Inst Cristallog, Moscow 117333, Russia

[2] DESY, EMBL, Hamburg Outstn, D-22603 Hamburg, Germany

来源：

JOURNAL OF APPLIED CRYSTALLOGRAPHY | 1997年 / 30卷 / 02期

关键词：

D O I：

10.1107/S0021889897001830

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

A program for three-dimensional rendering and interactive model refinement, ASSA, is presented. The program permits the simultaneous display and manipulation of low-resolution envelope models obtained from solution-scattering data and the crystallographic or electron microscopic models in the Brookhaven Protein Data Bank format. ASSA is coupled with the shape-determination program of Svergun, Volkov, Kozin, Stuhrmann, Barberato & Koch [J. Appl. Cryst. (1997). 30, 000-000], thus allowing one to monitor the shape determination process in real time. The program ASSA is written in C using the PHIGS+ standard for the three-dimensional solid rendering and the XView and XLib libraries for the menu-driven user interface. The system runs on a Sun SPARC ZX-20 workstation; a simplified IBM-PC version is also available.

引用

收藏

页码：811 / 815

页数：5

相关论文

共 12 条

[1] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].

BERNSTEIN, FC ;

KOETZLE, TF ;

WILLIAMS, GJB ;

MEYER, EF ;

BRICE, MD ;

RODGERS, JR ;

KENNARD, O ;

SHIMANOUCHI, T ;

TASUMI, M .

JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542

[2] REAL-SPACE REFINEMENT OF STRUCTURE OF HEN EGG-WHITE LYSOZYME [J].

DIAMOND, R .

JOURNAL OF MOLECULAR BIOLOGY, 1974, 82 (03) :371-&

[3] IMPROVED METHODS FOR BUILDING PROTEIN MODELS IN ELECTRON-DENSITY MAPS AND THE LOCATION OF ERRORS IN THESE MODELS [J].

JONES, TA ;

ZOU, JY ;

COWAN, SW ;

KJELDGAARD, M .

ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :110-119

[4] SOME COMPUTER DRAWINGS OF MOLECULAR AND SOLID-STATE STRUCTURES [J].

KELLER, E .

JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1989, 22 :19-&

[5]

RODGERS D, 1985, PROCEDURAL ELEMENTS

[6] DETERMINATION OF SURFACE FORM OF DISSOLVED MYOGLOBIN FROM SMALL ANGLE X-RAY MEASUREMENTS [J].

STUHRMANN, HB .

ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-FRANKFURT, 1970, 72 (4-6) :185-+

[7] NEW METHOD FOR DETERMINATION OF SURFACE FORM AND INTERNAL STRUCTURE OF DISSOLVED GLOBULAR PROTEINS FROM SNALL ANGLE X-RAY MEASUREMENTS [J].

STUHRMANN, HB .

ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-FRANKFURT, 1970, 72 (4-6) :177-+

[8] CRYSOL - A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates [J].

Svergun, D ;

Barberato, C ;

Koch, MHJ .

JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1995, 28 :768-773

[9] Shape determination from solution scattering of biopolymers [J].

Svergun, DI ;

Volkov, VV ;

Kozin, MB ;

Stuhrmann, HB ;

Barberato, C ;

Koch, MHJ .

JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1997, 30 (02) :798-802

[10] New developments in direct shape determination from small-angle scattering .2. Uniqueness [J].

Svergun, DI ;

Volkov, VV ;

Kozin, MB ;

Stuhrmann, HB .

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1996, 52 :419-426