A combined linkage-physical map of the human genome

被引:192
作者
Kong, X
Murphy, K
Raj, T
He, C
White, PS
Matise, TC
机构
[1] Rutgers State Univ, Dept Genet, Piscataway, NJ 08840 USA
[2] Childrens Hosp Philadelphia, Div Oncol, Philadelphia, PA 19104 USA
关键词
D O I
10.1086/426405
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We have constructed de novo a high-resolution genetic map that includes the largest set, to our knowledge, of polymorphic markers (N = 14,759) for which genotype data are publicly available; that combines genotype data from both the Centre d'Etude du Polymorphisme Humain (CEPH) and deCODE pedigrees; that incorporates single-nucleotide polymorphisms; and that also incorporates sequence-based positional information. The position of all markers on our map is corroborated by both genomic sequence and recombination-based data. This specific combination of features maximizes marker inclusion, coverage, and resolution, making this map uniquely suitable as a comprehensive resource for determining genetic map information (order and distances) for any large set of polymorphic markers.
引用
收藏
页码:1143 / 1148
页数:6
相关论文
共 16 条
[1]  
BAHLO M, 2004, BIOINFORMATICS 0624
[2]   Comprehensive human genetic maps: Individual and sex-specific variation in recombination [J].
Broman, KW ;
Murray, JC ;
Sheffield, VC ;
White, RL ;
Weber, JL .
AMERICAN JOURNAL OF HUMAN GENETICS, 1998, 63 (03) :861-869
[3]   PROGRAM DESCRIPTION - CENTER-DETUDE-DU-POLYMORPHISME-HUMAIN (CEPH) - COLLABORATIVE GENETIC-MAPPING OF THE HUMAN GENOME [J].
DAUSSET, J ;
CANN, H ;
COHEN, D ;
LATHROP, M ;
LALOUEL, JM ;
WHITE, R .
GENOMICS, 1990, 6 (03) :575-577
[4]   A comprehensive genetic map of the human genome based on 5,264 microsatellites [J].
Dib, C ;
Faure, S ;
Fizames, C ;
Samson, D ;
Drouot, N ;
Vignal, A ;
Millasseau, P ;
Marc, S ;
Hazan, J ;
Seboun, E ;
Lathrop, M ;
Gyapay, G ;
Morissette, J ;
Weissenbach, J .
NATURE, 1996, 380 (6570) :152-154
[5]   Large-scale genotyping of complex DNA [J].
Kennedy, GC ;
Matsuzaki, H ;
Dong, SL ;
Liu, WM ;
Huang, J ;
Liu, GY ;
Xu, X ;
Cao, MQ ;
Chen, WW ;
Zhang, J ;
Liu, WW ;
Yang, G ;
Di, XJ ;
Ryder, T ;
He, ZJ ;
Surti, U ;
Phillips, MS ;
Boyce-Jacino, MT ;
Fodor, SPA ;
Jones, KW .
NATURE BIOTECHNOLOGY, 2003, 21 (10) :1233-1237
[6]   A high-resolution recombination map of the human genome [J].
Kong, A ;
Gudbjartsson, DF ;
Sainz, J ;
Jonsdottir, GM ;
Gudjonsson, SA ;
Richardsson, B ;
Sigurdardottir, S ;
Barnard, J ;
Hallbeck, B ;
Masson, G ;
Shlien, A ;
Palsson, ST ;
Frigge, ML ;
Thorgeirsson, TE ;
Gulcher, JR ;
Stefansson, K .
NATURE GENETICS, 2002, 31 (03) :241-247
[7]  
KONG X, 2004, BIOINFORMATICS 0916
[8]   CONSTRUCTION OF MULTILOCUS GENETIC-LINKAGE MAPS IN HUMANS [J].
LANDER, ES ;
GREEN, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (08) :2363-2367
[9]   A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set [J].
Matise, TC ;
Sachidanandam, R ;
Clark, AG ;
Kruglyak, L ;
Wijsman, E ;
Kakol, J ;
Buyske, S ;
Chui, B ;
Cohen, P ;
de Toma, C ;
Ehm, M ;
Glanowski, S ;
He, CS ;
Heil, J ;
Markianos, K ;
McMullen, I ;
Pericak-Vance, MA ;
Silbergleit, A ;
Stein, L ;
Wagner, M ;
Wilson, AF ;
Winick, JD ;
Winn-Deen, ES ;
Yamashiro, CT ;
Cann, HM ;
Lai, E ;
Holden, AL .
AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (02) :271-284
[10]  
Matise TC, 1999, AM J HUM GENET, V65, pA435