Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle

被引：137

作者：

Durso, Lisa M. ^{[1
]}

Harhay, Gregory P. ^{[1
]}

Smith, Timothy P. L. ^{[1
]}

Bono, James L. ^{[1
]}

DeSantis, Todd Z. ^{[2
]}

Harhay, Dayna M. ^{[1
]}

Andersen, Gary L. ^{[2
]}

Keen, James E. ^{[1
]}

Laegreid, William W. ^{[1
]}

Clawson, Michael L. ^{[1
]}

机构：

[1] ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA

[2] Univ Calif Berkeley, Lawrence Berkeley Lab, Ctr Environm Biotechnol, Berkeley, CA 94720 USA

来源：

APPLIED AND ENVIRONMENTAL MICROBIOLOGY | 2010年 / 76卷 / 14期

关键词：

SEQUENCES; RICHNESS; PROGRAM;

D O I：

10.1128/AEM.00207-10

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

The intestinal microbiota of beef cattle are important for animal health, food safety, and methane emissions. This full-length sequencing survey of 11,171 16S rRNA genes reveals animal-to-animal variation in communities that cannot be attributed to breed, gender, diet, age, or weather. Beef communities differ from those of dairy. Core bovine taxa are identified.

引用

页码：4858 / 4862

页数：5

共 19 条

[1]

[Anonymous], 2005, PHYLIP (phylogeny inference package) version 3.6

[2]

Dowd SE, 2008, BMC MICROBIOL, V8, DOI [10.1186/1471-2180-8-125, 10.1186/1471-2180-8-43]

[3] Diversity of the human intestinal microbial flora [J].

Eckburg, PB ;

Bik, EM ;

Bernstein, CN ;

Purdom, E ;

Dethlefsen, L ;

Sargent, M ;

Gill, SR ;

Nelson, KE ;

Relman, DA .

SCIENCE, 2005, 308 (5728) :1635-1638

[4] Experimental factors affecting PCR-based estimates of microbial species richness and evenness [J].

Engelbrektson, Anna ;

Kunin, Victor ;

Wrighton, Kelly C. ;

Zvenigorodsky, Natasha ;

Chen, Feng ;

Ochman, Howard ;

Hugenholtz, Philip .

ISME JOURNAL, 2010, 4 (05) :642-647

[5] Gut flora in health and disease [J].

Guarner, F ;

Malagelada, JR .

LANCET, 2003, 361 (9356) :512-519

[6] Bellerophon: a program to detect chimeric sequences in multiple sequence alignments [J].

Huber, T ;

Faulkner, G ;

Hugenholtz, P .

BIOINFORMATICS, 2004, 20 (14) :2317-2319

[7]

JOHNSON KA, 1995, J ANIM SCI, V73, P2483

[8] Bias and artifacts in multitemplate polymerase chain reactions (PCR) [J].

Kanagawa, T .

JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 2003, 96 (04) :317-323

[9] Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers [J].

Liu, Zongzhi ;

DeSantis, Todd Z. ;

Andersen, Gary L. ;

Knight, Rob .

NUCLEIC ACIDS RESEARCH, 2008, 36 (18)

[10] Negative Effects of Sample Pooling on PCR-Based Estimates of Soil Microbial Richness and Community Structure [J].

Manter, Daniel K. ;

Weir, Tiffany L. ;

Vivanco, Jorge M. .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2010, 76 (07) :2086-2090

← 1 2 →