Controlling the conformation of arylamides: Computational studies of intramolecular hydrogen bonds between amides and ethers or thioethers

被引:36
作者
Doerksen, RJ
Chen, B
Liu, DH
Tew, GN
DeGrado, WF
Klein, ML
机构
[1] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA
[2] Univ Penn, Sch Med, Dept Biochem & Biophys, Philadelphia, PA 19104 USA
[3] Univ Massachusetts, Dept Polymer Sci & Engn, Amherst, MA 01003 USA
关键词
acetanilides; amides; density functional calculations; hydrogen bonds; oligomers;
D O I
10.1002/chem.200400176
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The role of an ortho-alkylthioether group in controlling the conformation around the ring-N bonds of meta-connected arylamide oligomers is studied. Density functional theory (DFT) geometries of model compounds, including acetanilide, an ether acetanilide, and a thioether acetanilide, and their corresponding diamides, show that for either monoamide or diamide the alkyl side chain of the thioether should be perpendicular to the aryl plane, whereas for the ether monoamide, the alkyl side chain is in the aryl plane. DFT ring-N torsional potentials and constrained geometries of the model compounds demonstrate that carbonyl-S repulsion leads to a high torsional barrier and that intramolecular N-H...S and C-H...O hydrogen bonds and ring-amide conjugation lead to N-H having a preferred orientation in the benzene plane pointing towards S. The N-H bond lengthens and the ortho-ring C-H bond shortens in a regular pattern in the approach to the preferred orientation. Calculated IR frequencies for the N-H stretch show a clear red shift between model compounds without and with the thioether side chain.
引用
收藏
页码:5008 / 5016
页数:9
相关论文
共 76 条
[1]   Electronic basis of improper hydrogen bonding: A subtle balance of hyperconjugation and rehybridization [J].
Alabugin, IV ;
Manoharan, M ;
Peabody, S ;
Weinhold, F .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (19) :5973-5987
[2]   Hydrogen-bond acceptor and donor properties of divalent sulfur (Y-S-Z and R-S-H) [J].
Allen, FH ;
Bird, CM ;
Rowland, RS ;
Raithby, PR .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1997, 53 :696-701
[3]   A SURVEY OF C-H GROUPS AS PROTON DONORS IN HYDROGEN BONDING [J].
ALLERHAND, A ;
SCHLEYER, PV .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1963, 85 (12) :1715-+
[4]   Bioinspired polymeric materials: in-between proteins and plastics [J].
Barron, AE ;
Zuckermann, RN .
CURRENT OPINION IN CHEMICAL BIOLOGY, 1999, 3 (06) :681-687
[5]   Solution and solid-state models of peptide CH•••O hydrogen bonds [J].
Baures, PW ;
Beatty, AM ;
Dhanasekaran, M ;
Helfrich, BA ;
Pérez-Segarra, W ;
Desper, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (38) :11315-11323
[6]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]  
Berl V, 2002, CHEM-EUR J, V8, P1227, DOI 10.1002/1521-3765(20020301)8:5<1227::AID-CHEM1227>3.0.CO
[9]  
2-0
[10]   Innate immunity and the normal microflora [J].
Boman, HG .
IMMUNOLOGICAL REVIEWS, 2000, 173 :5-16