C-H•••π interactions in the metal-porphyrin complexes with chelate ring as the H acceptor

被引:58
作者
Medakovic, VB
Milcic, MK
Bogdanovic, GA
Zaric, SD
机构
[1] Univ Belgrade, Dept Chem, YU-11000 Belgrade, Serbia
[2] Vinca Inst Nucl Sci, Lab Theoret Phys & Condensed Matter Phys, YU-11001 Belgrade, Serbia
关键词
C-H center dot center dot center dot pi imeractions; chelate ring; metalo porphyrins; DFT;
D O I
10.1016/j.jinorgbio.2004.08.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Specific C-H(...)pi interactions with the pi-system of porphyrinato chelate ring were found in crystal structures of transition metal complexes from the Cambridge Structural Database and statistical analysis of geometrical parameters for intramolecular and intermolecular interactions was done. By density functional theory calculations on a model system it was evaluated that an interaction energy is above 1.5 kcal/mol and that the strongest interaction occurs when the distance between hydrogen atom and the center of the chelate ring is 2.6 Angstrom. This prediction is in good agreement with the distances for intermolecular interactions found in the crystal structures. In many cases the intramolecular interaction distances are much shorter than 2.6 Angstrom, and these short distances are caused by geometrical constrains. The C-H(...)pi interactions with chelate ring of porphyrinato ligand can influence the structure, contribute to its stability, and play some role in the function of biomolecules with metalo porphyrins. (C) 2004 Elsevier Inc. All rights reserved.
引用
收藏
页码:1867 / 1873
页数:7
相关论文
共 50 条
[1]   CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION [J].
ALLEN, FH ;
BELLARD, S ;
BRICE, MD ;
CARTWRIGHT, BA ;
DOUBLEDAY, A ;
HIGGS, H ;
HUMMELINK, T ;
HUMMELINKPETERS, BG ;
KENNARD, O ;
MOTHERWELL, WDS ;
RODGERS, JR ;
WATSON, DG .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT) :2331-2339
[2]   Influence of substituents on cation-π interactions.: 3.: Absolute binding energies of alkali metal cation-aniline complexes determined by threshold collision-induced dissociation and theoretical studies [J].
Amunugama, R ;
Rodgers, MT .
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2003, 227 (03) :339-360
[3]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[4]  
Bogdanovic GA, 2002, EUR J INORG CHEM, P1599
[5]   Cation-π interaction in a folded polypeptide [J].
Burghardt, TP ;
Juranic, N ;
Macura, S ;
Ajtai, K .
BIOPOLYMERS, 2002, 63 (04) :261-272
[6]   Intramolecular "aryl-metal chelate ring" π,π-interactions as structural evidence for metalloaromaticity in (aromatic α,α′-diimine)-copper(II) chelates:: Molecular and crystal structure of aqua(1,10-phenanthroline)(2-benzylmalonato)copper(II) three-hydrate [J].
Castiñeiras, A ;
Sicilia-Zafra, AG ;
González-Pérez, JM ;
Choquesillo-Lazarte, D ;
Niclós-Gutiérrez, J .
INORGANIC CHEMISTRY, 2002, 41 (26) :6956-6958
[7]  
Desiraju G. R., 1999, WEAK HYDROGEN BOND S, DOI DOI 10.1093/ACPROT:OSO/9780198509707.003.0002
[8]   Cation-pi interactions in chemistry and biology: A new view of benzene, Phe, Tyr, and Trp [J].
Dougherty, DA .
SCIENCE, 1996, 271 (5246) :163-168
[9]  
Frisch M.J., 2016, Gaussian 16 Revision C. 01. 2016, V01
[10]  
Hirota M, 1998, CH INTERACTION EVIDE