Forensic identification using skin bacterial communities

被引:404
作者
Fierer, Noah [1 ,2 ]
Lauber, Christian L. [2 ]
Zhou, Nick [2 ]
McDonald, Daniel [3 ]
Costello, Elizabeth K. [3 ]
Knight, Rob [3 ]
机构
[1] Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USA
[2] Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
[3] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
bacterial forensics; human microbiome; pyrosequencing; skin microbiology; microbial ecology; MICROBIAL COMMUNITIES; MOLECULAR ANALYSIS; DIVERSITY; DATABASE; PROJECT; UNIFRAC; SAMPLES; HEALTH;
D O I
10.1073/pnas.1000162107
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Recent work has demonstrated that the diversity of skin-associated bacterial communities is far higher than previously recognized, with a high degree of interindividual variability in the composition of bacterial communities. Given that skin bacterial communities are personalized, we hypothesized that we could use the residual skin bacteria left on objects for forensic identification, matching the bacteria on the object to the skin-associated bacteria of the individual who touched the object. Here we describe a series of studies demonstrating the validity of this approach. We show that skin-associated bacteria can be readily recovered from surfaces ( including single computer keys and computer mice) and that the structure of these communities can be used to differentiate objects handled by different individuals, even if those objects have been left untouched for up to 2 weeks at room temperature. Furthermore, we demonstrate that we can use a high-throughput pyrosequencing-based approach to quantitatively compare the bacterial communities on objects and skin to match the object to the individual with a high degree of certainty. Although additional work is needed to further establish the utility of this approach, this series of studies introduces a forensics approach that could eventually be used to independently evaluate results obtained using more traditional forensic practices.
引用
收藏
页码:6477 / 6481
页数:5
相关论文
共 25 条
[1]  
Brooke JS, 2009, J ENVIRON HEALTH, V71, P17
[2]  
Clarke K. R., 2006, PRIMER
[3]   NONPARAMETRIC MULTIVARIATE ANALYSES OF CHANGES IN COMMUNITY STRUCTURE [J].
CLARKE, KR .
AUSTRALIAN JOURNAL OF ECOLOGY, 1993, 18 (01) :117-143
[4]   The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].
Cole, J. R. ;
Wang, Q. ;
Cardenas, E. ;
Fish, J. ;
Chai, B. ;
Farris, R. J. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Marsh, T. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145
[5]   Bacterial Community Variation in Human Body Habitats Across Space and Time [J].
Costello, Elizabeth K. ;
Lauber, Christian L. ;
Hamady, Micah ;
Fierer, Noah ;
Gordon, Jeffrey I. ;
Knight, Rob .
SCIENCE, 2009, 326 (5960) :1694-1697
[6]   NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes [J].
DeSantis, T. Z. ;
Hugenholtz, P. ;
Keller, K. ;
Brodie, E. L. ;
Larsen, N. ;
Piceno, Y. M. ;
Phan, R. ;
Andersen, G. L. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :W394-W399
[7]   Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB [J].
DeSantis, T. Z. ;
Hugenholtz, P. ;
Larsen, N. ;
Rojas, M. ;
Brodie, E. L. ;
Keller, K. ;
Huber, T. ;
Dalevi, D. ;
Hu, P. ;
Andersen, G. L. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (07) :5069-5072
[8]   The influence of sex, handedness, and washing on the diversity of hand surface bacteria [J].
Fierer, Noah ;
Hamady, Micah ;
Lauber, Christian L. ;
Knight, Rob .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (46) :17994-17999
[9]   Microbial ecology of human skin in health and disease [J].
Fredricks, DN .
JOURNAL OF INVESTIGATIVE DERMATOLOGY SYMPOSIUM PROCEEDINGS, 2001, 6 (03) :167-169
[10]   Molecular analysis of human forearm superficial skin bacterial biota [J].
Gao, Zhan ;
Tseng, Chi-hong ;
Pei, Zhiheng ;
Blaser, Martin J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (08) :2927-2932