An Upper-Level Ontology for Chemistry

被引：2

作者：

Batchelor, Colin ^{[1
]}

机构：

[1] Royal Soc Chem, Cambridge CB4 0WF, England

来源：

FORMAL ONTOLOGY IN INFORMATION SYSTEMS | 2008年 / 183卷

关键词：

upper-level ontology; chemistry; OBO Relation Ontology;

D O I：

10.3233/978-1-58603-923-3-195

中图分类号：

TP18 [人工智能理论];

学科分类号：

081104 [模式识别与智能系统]; 0812 [计算机科学与技术]; 0835 [软件工程]; 1405 [智能科学与技术];

摘要：

Chemical entities are the foundation of biochemistry and biology, but until now there have been few coherent attempts to produce a top-level Ontology for chemistry to connect ontological descriptions of reality at the molecular level, such as ChEBI, with upper-level ontologies Such as BFO, or indeed familiar laboratory-scale concepts Such as mixtures. We work out relationships between chemical types that are compatible with the OBO Relation Ontology, describe macroscopic chemical systems in terms of grains and collectives, and propose a top-level ontology for chemically-relevant continuants and discuss it in relation to BFO and BioTop.

引用

页码：195 / 207

页数：13

共 24 条

[1]

[Anonymous], COMMUNICATION

[2]

Identification of OBO nonalignments and its implications for OBO enrichment [J].

Bada, Michael ;

Hunter, Lawrence .

BIOINFORMATICS, 2008, 24 (12) :1448-1455

[3]

BODENREIDER O, 2004, P FOIS 2006 INT C FO

[4]

CORBETT P, 2008, P BERBMTM 08 LREC 20

[5]

ChEBI:: a database and ontology for chemical entities of biological interest [J].

Degtyarenko, Kirill ;

de Matos, Paula ;

Ennis, Marcus ;

Hastings, Janna ;

Zbinden, Martin ;

McNaught, Alan ;

Alcantara, Rafael ;

Darsow, Michael ;

Guedj, Mickael ;

Ashburner, Michael .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D344-D350

[6]

CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules [J].

Feldman, HJ ;

Dumontier, M ;

Ling, S ;

Haider, N ;

Hogue, CWV .

FEBS LETTERS, 2005, 579 (21) :4685-4691

[7]

Grenon P, 2004, STUD HEALTH TECHNOL, V102, P20

[8]

The Gene Ontology (GO) project in 2006 [J].

Harris, Midori A. ;

Clark, Jennifer I. ;

Ireland, Amelia ;

Lomax, Jane ;

Ashburner, Michael ;

Collins, Russell ;

Eilbeck, Karen ;

Lewis, Suzanna ;

Mungall, Chris ;

Richter, John ;

Rubin, Gerald M. ;

Shu, ShengQiang ;

Blake, Judith A. ;

Bult, Carol J. ;

Diehl, Alexander D. ;

Dolan, Mary E. ;

Drabkin, Harold J. ;

Eppig, Janan T. ;

Hill, David P. ;

Ni, Li ;

Ringwald, Martin ;

Balakrishnan, Rama ;

Binkley, Gail ;

Cherry, J. Michael ;

Christie, Karen R. ;

Costanzo, Maria C. ;

Dong, Qing ;

Engel, Stacia R. ;

Fisk, Dianna G. ;

Hirschman, Jodi E. ;

Hitz, Benjamin C. ;

Hong, Eurie L. ;

Lane, Christopher ;

Miyasato, Stuart ;

Nash, Robert ;

Sethuraman, Anand ;

Skrzypek, Marek ;

Theesfeld, Chandra L. ;

Weng, Shuai ;

Botstein, David ;

Dolinski, Kara ;

Oughtred, Rose ;

Berardini, Tanya ;

Mundodi, Suparna ;

Rhee, Seung Y. ;

Apweiler, Rolf ;

Barrell, Daniel ;

Camon, Evelyn ;

Dimmer, Emily ;

Mulder, Nicola .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D322-D326

[9]

HERRE H, GEN FORMAL ONTOLOG 1

[10]

*IUPAC COMP CHEM T, EL VERS

← 1 2 3 →