TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities

被引：5

作者：

Gu, Shengyin

Anderson, Iain

Kunin, Victor

Cipriano, Michael

Minovitsky, Simon

Weber, Gunther

Amenta, Nina

Hamann, Bernd

Dubchak, Inna

机构：

[1] Joint Genome Inst, Walnut Creek, CA 94598 USA

[2] Univ Calif Davis, IDAV, Dept Comp Sci, Davis, CA 95616 USA

[3] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

来源：

BIOINFORMATICS | 2007年 / 23卷 / 06期

关键词：

D O I：

10.1093/bioinformatics/btl643

中图分类号：

Q5 [生物化学];

学科分类号：

071010 [生物化学与分子生物学]; 081704 [应用化学];

摘要：

We describe a general multiplatform exploratory tool called TreeQ-Vista, designed for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic properties, are interactively queried from a user-provided relational database with a user-friendly interface which provides a set of tools for users with or without SQL knowledge. The query results are projected onto a phylogenetic tree and can be displayed in multiple color groups. A rich set of browsing, grouping and query tools are provided to facilitate trait exploration, comparison and analysis.

引用

收藏

页码：764 / 766

页数：3

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