Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability

被引:308
作者
Beckmann, Jacques S.
Estivill, Xavier
Antonarakis, Stylianos E.
机构
[1] Univ Lausanne, Dept Med Genet, CH-1011 Lausanne, Switzerland
[2] CHU Vaudois, CH-1011 Lausanne, Switzerland
[3] CIBERESP, Genes & Dis Program, CRG, CeGen, E-08003 Barcelona, Catalonia, Spain
[4] Pompeu Fabra Univ, E-08003 Barcelona, Catalonia, Spain
[5] Univ Geneva, Sch Med, Dept Genet Med & Dev, CH-1211 Geneva, Switzerland
[6] Univ Hosp Geneva, CH-1211 Geneva, Switzerland
基金
美国国家卫生研究院;
关键词
D O I
10.1038/nrg2149
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A considerable and unanticipated plasticity of the human genome, manifested as inter-individual copy number variation, has been discovered. These structural changes constitute a major source of inter-individual genetic variation that could explain variable penetrance of inherited (Mendelian and polygenic) diseases and variation in the phenotypic expression of aneuploidies and sporadic traits, and might represent a major factor in the aetiology of complex, multifactorial traits. For these reasons, an effort should be made to discover all common and rare copy number variants (CNVs) in the human population. This will also enable systematic exploration of both SNPs and CNVs in association studies to identify the genomic contributors to the common disorders and complex traits.
引用
收藏
页码:639 / 646
页数:8
相关论文
共 94 条
[1]   Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans [J].
Aitman, TJ ;
Dong, R ;
Vyse, TJ ;
Norsworthy, PJ ;
Johnson, MD ;
Smith, J ;
Mangion, J ;
Roberton-Lowe, C ;
Marshall, AJ ;
Petretto, E ;
Hodges, MD ;
Bhangal, G ;
Patel, SG ;
Sheehan-Rooney, K ;
Duda, M ;
Cook, PR ;
Evans, DJ ;
Domin, J ;
Flint, J ;
Boyle, JJ ;
Pusey, CD ;
Cook, HT .
NATURE, 2006, 439 (7078) :851-855
[2]   A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[3]   Opinion - Mendelian disorders deserve more attention [J].
Antonarakis, SE ;
Beckmann, JS .
NATURE REVIEWS GENETICS, 2006, 7 (04) :277-282
[4]   Chromosome 21 and Down syndrome: From genomics to pathophysiology [J].
Antonarakis, SE ;
Lyle, R ;
Dermitzakis, ET ;
Reymond, A ;
Deutsch, S .
NATURE REVIEWS GENETICS, 2004, 5 (10) :725-738
[5]   PARENTAL ORIGIN OF THE EXTRA CHROMOSOME IN TRISOMY-21 AS INDICATED BY ANALYSIS OF DNA POLYMORPHISMS [J].
ANTONARAKIS, SE .
NEW ENGLAND JOURNAL OF MEDICINE, 1991, 324 (13) :872-876
[6]   Measurement of locus copy number by hybridisation with amplifiable probes [J].
Armour, JAL ;
Sismani, C ;
Patsalis, PC ;
Cross, G .
NUCLEIC ACIDS RESEARCH, 2000, 28 (02) :605-609
[7]   SURVEY OF HUMAN AND RAT MICROSATELLITES [J].
BECKMANN, JS ;
WEBER, JL .
GENOMICS, 1992, 12 (04) :627-631
[8]   Molecular mechanisms for CMT1A duplication and HNPP deletion [J].
Boerkoel, CF ;
Inoue, K ;
Reiter, LT ;
Warner, LE ;
Lupski, JR .
CHARCOT-MARIE-TOOTH DISORDERS, 1999, 883 :22-35
[9]  
BOTSTEIN D, 1980, AM J HUM GENET, V32, P314
[10]   A functional variant of lymphoid tyrosine phosphatase is associated with type I diabetes [J].
Bottini, N ;
Musumeci, L ;
Alonso, A ;
Rahmouni, S ;
Nika, K ;
Rostamkhani, M ;
MacMurray, J ;
Meloni, GF ;
Lucarelli, P ;
Pellecchia, M ;
Eisenbarth, GS ;
Comings, D ;
Mustelin, T .
NATURE GENETICS, 2004, 36 (04) :337-338