Data-driven docking for the study of biomolecular complexes

被引：109

作者：

van Dijk, ADJ ^{[1
]}

Boelens, R ^{[1
]}

Bonvin, AMJJ ^{[1
]}

机构：

[1] Univ Utrecht, Dept NMR Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands

来源：

FEBS JOURNAL | 2005年 / 272卷 / 02期

关键词：

biomolecular complexes; docking; interface mapping;

D O I：

10.1111/j.1742-4658.2004.04473.x

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

With the amount of genetic information available, a lot of attention has focused on systems biology, in particular biomolecular interactions. Considering the huge number of such interactions, and their often weak and transient nature, conventional experimental methods such as X-ray crystallography and NMR spectroscopy are not sufficient to gain structural insight into these. A wealth of biochemical and/or biophysical data can, however, readily be obtained for biomolecular complexes. Combining these data with docking (the process of modeling the 3D structure of a complex from its known constituents) should provide valuable structural information and complement the classical structural methods. In this review we discuss and illustrate the various sources of data that can be used to map interactions and their combination with docking methods to generate structural models of the complexes. Finally a perspective on the future of this kind of approach is given.

引用

页码：293 / 312

页数：20

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