Fractional populations in multiple gene inheritance

被引:3
作者
Chung, MH [1 ]
Kim, CK
Nahm, K
机构
[1] Hongik Univ, Dept Phys, Jochiwon 339800, Choongnam, South Korea
[2] Yale Univ, Dept Phys, New Haven, CT 06520 USA
[3] Yonsei Univ, Inst Phys & Appl Phys, Seoul 120749, South Korea
[4] Seoul Natl Univ, Ctr Strongly Correlated Mat Res, Seoul 151742, South Korea
[5] Yonsei Univ, Dept Phys, Wonju 220710, South Korea
基金
新加坡国家研究基金会;
关键词
D O I
10.1093/bioinformatics/19.2.256
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: With complete knowledge of the human genome sequence, one of the most interesting tasks remaining is to understand the functions of individual genes and how they communicate. Using the information about genes (locus, allele, mutation rate, fitness, etc.), we attempt to explain population demographic data. This population evolution study could complement and enhance biologists' understanding about genes. Results: We present a general approach to study population genetics in complex situations. In the present approach, multiple allele inheritance, multiple loci inheritance, natural selection and mutations are allowed simultaneously in order to consider a more realistic situation. A simulation program is presented so that readers can readily carry out studies with their own parameters. It is shown that the multiplicity of the loci greatly affects the demographic results of fractional population ratios. Furthermore, the study indicates that some high infant mortality rates due to congenital anomalies can be attributed to multiple loci inheritance. Availability: The simulation program can be downloaded from http://won.hongik.ac.kr/similar tomhchung/index_files/yapop.htm. In order to run this program, one needs Visual Studio.NET platform, which can be downloaded from http://msdn.microsoft.com/netframework/downloads/default.asp. Contact: mhchung@hongik.ac.kr.
引用
收藏
页码:256 / 260
页数:5
相关论文
共 9 条
[1]   Female gene flow stratifies Hindu castes [J].
Bamshad, MJ ;
Watkins, WS ;
Dixon, ME ;
Jorde, LB ;
Rao, BB ;
Naidu, JM ;
Prasad, BVR ;
Rasanayagam, A ;
Hammer, MF .
NATURE, 1998, 395 (6703) :651-652
[2]   Fractional populations of blood groups [J].
Chung, MH ;
Lee, SP ;
Kim, CK ;
Nahm, K .
PHYSICAL REVIEW E, 1997, 56 (01) :865-869
[3]   POPSIM:: a general population simulation program [J].
Hampe, J ;
Wienker, T ;
Schreiber, S ;
Nürnberg, P .
BIOINFORMATICS, 1998, 14 (05) :458-464
[4]  
Hedrick PW, 1985, GENETICS POPULATIONS
[5]   Initial sequencing and analysis of the human genome [J].
Lander, ES ;
Int Human Genome Sequencing Consortium ;
Linton, LM ;
Birren, B ;
Nusbaum, C ;
Zody, MC ;
Baldwin, J ;
Devon, K ;
Dewar, K ;
Doyle, M ;
FitzHugh, W ;
Funke, R ;
Gage, D ;
Harris, K ;
Heaford, A ;
Howland, J ;
Kann, L ;
Lehoczky, J ;
LeVine, R ;
McEwan, P ;
McKernan, K ;
Meldrim, J ;
Mesirov, JP ;
Miranda, C ;
Morris, W ;
Naylor, J ;
Raymond, C ;
Rosetti, M ;
Santos, R ;
Sheridan, A ;
Sougnez, C ;
Stange-Thomann, N ;
Stojanovic, N ;
Subramanian, A ;
Wyman, D ;
Rogers, J ;
Sulston, J ;
Ainscough, R ;
Beck, S ;
Bentley, D ;
Burton, J ;
Clee, C ;
Carter, N ;
Coulson, A ;
Deadman, R ;
Deloukas, P ;
Dunham, A ;
Dunham, I ;
Durbin, R ;
French, L .
NATURE, 2001, 409 (6822) :860-921
[6]  
Lee SP, 2001, PHYSICA A, V291, P533, DOI 10.1016/S0378-4371(00)00600-2
[7]  
LI CC, 1976, FIRST COURSE POPULAT
[8]   PopGene [J].
Quardokus, E .
SCIENCE, 2000, 288 (5465) :458-458
[9]   The sequence of the human genome [J].
Venter, JC ;
Adams, MD ;
Myers, EW ;
Li, PW ;
Mural, RJ ;
Sutton, GG ;
Smith, HO ;
Yandell, M ;
Evans, CA ;
Holt, RA ;
Gocayne, JD ;
Amanatides, P ;
Ballew, RM ;
Huson, DH ;
Wortman, JR ;
Zhang, Q ;
Kodira, CD ;
Zheng, XQH ;
Chen, L ;
Skupski, M ;
Subramanian, G ;
Thomas, PD ;
Zhang, JH ;
Miklos, GLG ;
Nelson, C ;
Broder, S ;
Clark, AG ;
Nadeau, C ;
McKusick, VA ;
Zinder, N ;
Levine, AJ ;
Roberts, RJ ;
Simon, M ;
Slayman, C ;
Hunkapiller, M ;
Bolanos, R ;
Delcher, A ;
Dew, I ;
Fasulo, D ;
Flanigan, M ;
Florea, L ;
Halpern, A ;
Hannenhalli, S ;
Kravitz, S ;
Levy, S ;
Mobarry, C ;
Reinert, K ;
Remington, K ;
Abu-Threideh, J ;
Beasley, E .
SCIENCE, 2001, 291 (5507) :1304-+