Understanding human DNA sequence variation

被引:58
作者
Kidd, KK [1 ]
Pakstis, AJ [1 ]
Speed, WC [1 ]
Kidd, JR [1 ]
机构
[1] Yale Univ, Sch Med, Dept Genet, New Haven, CT 06520 USA
关键词
D O I
10.1093/jhered/esh060
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Over the past century researchers have identified normal genetic variation and studied that variation in diverse human populations to determine the amounts and distributions of that variation. That information is being used to develop an understanding of the demographic histories of the different populations and the species as a whole, among other studies. With the advent of DNA-based markers in the last quarter century, these studies have accelerated. One of the challenges for the next century is to understand that variation. One component of that understanding will be population genetics. We present here examples of many of the ways these new data can be analyzed from a population perspective using results from our laboratory on multiple individual DNA-based polymorphisms, many clustered in haplotypes, studied in multiple populations representing all major geographic regions of the world. These data support an "out of Africa" hypothesis for human dispersal around the world and begin to refine the understanding of population structures and genetic relationships. We are also developing baseline information against which we can compare findings at different loci to aid in the identification of loci subject, now and in the past, to selection (directional or balancing). We do not yet have a comprehensive understanding of the extensive variation in the human genome, but some of that understanding is coming from population genetics.
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收藏
页码:406 / 420
页数:15
相关论文
共 54 条
[1]   Minisatellite diversity supports a recent African origin for modern humans [J].
Armour, JAL ;
Anttinen, T ;
May, CA ;
Vega, EE ;
Sajantila, A ;
Kidd, JR ;
Kidd, KK ;
Bertranpetit, J ;
Paabo, S ;
Jeffreys, AJ .
NATURE GENETICS, 1996, 13 (02) :154-160
[2]   Signatures of natural selection in the human genome [J].
Bamshad, M ;
Wooding, SP .
NATURE REVIEWS GENETICS, 2003, 4 (02) :99-111A
[3]   Haplotype and linkage disequilibrium architecture for human cancer-associated genes [J].
Bonnen, PE ;
Wang, PJ ;
Kimmel, M ;
Chakraborty, R ;
Nelson, DL .
GENOME RESEARCH, 2002, 12 (12) :1846-1853
[4]  
BOTSTEIN D, 1980, AM J HUM GENET, V32, P314
[5]   STR primer concordance study [J].
Budowle, B ;
Masibay, A ;
Anderson, SJ ;
Barna, C ;
Biega, L ;
Brenneke, S ;
Brown, BL ;
Cramer, J ;
DeGroot, GA ;
Douglas, D ;
Duceman, B ;
Eastman, A ;
Giles, R ;
Hamill, J ;
Haase, DJ ;
Janssen, DW ;
Kupferschmid, TD ;
Lawton, T ;
Lemire, C ;
Llewellyn, B ;
Moretti, T ;
Neves, J ;
Palaski, C ;
Schueler, S ;
Sgueglia, J ;
Sprecher, C ;
Tomsey, C ;
Yet, D .
FORENSIC SCIENCE INTERNATIONAL, 2001, 124 (01) :47-54
[6]  
Budowle B., 1998, P 2 EUR S HUM ID PRO, P73
[7]   MITOCHONDRIAL-DNA AND HUMAN-EVOLUTION [J].
CANN, RL ;
STONEKING, M ;
WILSON, AC .
NATURE, 1987, 325 (6099) :31-36
[8]  
CASTIGLIONE CM, 1995, AM J HUM GENET, V57, P1445
[9]  
Cavalli-Sforza L. L., 1994, HIST GEOGRAPHY HUMAN
[10]   Global survey of haplotype frequencies and linkage disequilibrium at the RET locus [J].
Chattopadhyay, P ;
Pakstis, AJ ;
Mukherjee, N ;
Iyengar, S ;
Odunsi, A ;
Okonofua, F ;
Bonne-Tamir, B ;
Speed, W ;
Kidd, JR ;
Kidd, KK .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2003, 11 (10) :760-769