Strong coupling effects during X-pulse CPMG experiments recorded on heteronuclear ABX spin systems:: artifacts and a simple solution

被引:14
作者
Vallurupalli, Pramodh
Scott, Lincoln
Williamson, James R.
Kay, Lewis E.
机构
[1] Univ Toronto, Dept Med Genet, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Biochem & Chem, Toronto, ON M5S 1A8, Canada
[3] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Mol Biol, La Jolla, CA 92037 USA
[4] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Chem, La Jolla, CA 92037 USA
基金
加拿大自然科学与工程研究理事会; 加拿大健康研究院;
关键词
strong scalar coupling; H-1 CPMG relaxation dispersion; spin-lock; ABX heteronuclear spin-system; RNA;
D O I
10.1007/s10858-006-9139-1
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Simulation and experiment have been used to establish that significant artifacts can be generated in X-pulse CPMG relaxation dispersion experiments recorded on heteronuclear ABX spin-systems, such as C-13(i) -C-13(j)-H-1, where C-13(j) and C-13(j) are strongly coupled. A qualitative explanation of the origin of these artifacts is presented along with a simple method to significantly reduce them. An application to the measurement of H-1 CPMG relaxation dispersion profiles in an HIV-2 TAR RNA molecule where all ribose sugars are protonated at the 2' position, deuterated at all other sugar positions and C-13 labeled at all sugar carbons is presented to illustrate the problems that strong C-13-C-13 coupling introduces and a simple solution is proposed.
引用
收藏
页码:41 / 46
页数:6
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