Substitutions in the Escherichia coli RNA polymerase σ70 factor that affect recognition of extended-10 elements at promoters

被引:38
作者
Sanderson, A [1 ]
Mitchell, JE [1 ]
Minchin, SD [1 ]
Busby, SJW [1 ]
机构
[1] Univ Birmingham, Sch Biosci, Birmingham B15 2TT, W Midlands, England
基金
英国惠康基金;
关键词
bacterial transcription initiation; RNA polymerase; sigma(70) subunit; promoter recognition; extended-10; promoters;
D O I
10.1016/S0014-5793(03)00500-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Previous work has shown that the base sequence of the DNA segment immediately upstream of the -10 hexamer at bacterial promoters (the extended -10 element) can make a significant contribution to promoter strength. Guided by recently published structural information, we used alanine scanning and suppression mutagenesis of Region 2.4 and Region 3.0 of the Escherichia coli RNA polymerase sigma(70) subunit to identify amino acid sidechains that play a role in recognition of this element. Our study shows that changes in these regions of the sigma(70) subunit can affect the recognition of different extended -10 element sequences. (C) 2003 Published by Elsevier Science B.V. on behalf of the Federation of European Biochemical Societies.
引用
收藏
页码:199 / 205
页数:7
相关论文
共 20 条
[1]   Region 2.5 of the Escherichia coli RNA polymerase sigma(70) subunit is responsible for the recognition of the 'extended -10' motif at promoters [J].
Barne, KA ;
Bown, JA ;
Busby, SJW ;
Minchin, SD .
EMBO JOURNAL, 1997, 16 (13) :4034-4040
[2]   Organization of open complexes at Escherichia coli promoters -: Location of promoter DNA sites close to region 2.5 of the σ70 subunit of RNA polymerase [J].
Bown, JA ;
Owens, JT ;
Meares, CF ;
Fujita, N ;
Ishihama, A ;
Busby, SJW ;
Minchin, SD .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (04) :2263-2270
[3]   DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters:: a systematic study [J].
Burr, T ;
Mitchell, J ;
Kolb, A ;
Minchin, S ;
Busby, S .
NUCLEIC ACIDS RESEARCH, 2000, 28 (09) :1864-1870
[4]   A PRACTICAL WAY OF LEARNING ABOUT DNA USING RUBBER TUBING AS A MODEL [J].
BUSBY, S .
JOURNAL OF BIOLOGICAL EDUCATION, 1995, 29 (02) :95-96
[5]   PROMOTER STRUCTURE, PROMOTER RECOGNITION, AND TRANSCRIPTION ACTIVATION IN PROKARYOTES [J].
BUSBY, S ;
EBRIGHT, RH .
CELL, 1994, 79 (05) :743-746
[6]   Autoregulation of a bacterial σ factor explored by using segmental isotopic labeling and NMR [J].
Camarero, JA ;
Shekhtman, A ;
Campbell, EA ;
Chlenov, M ;
Gruber, TM ;
Bryant, DA ;
Darst, SA ;
Cowburn, D ;
Muir, TW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (13) :8536-8541
[7]   Structure of the bacterial RNA polymerase promoter specificity σ subunit [J].
Campbell, EA ;
Muzzin, O ;
Chlenov, M ;
Sun, JL ;
Olson, CA ;
Weinman, O ;
Trester-Zedlitz, ML ;
Darst, SA .
MOLECULAR CELL, 2002, 9 (03) :527-539
[8]   The Escherichia coli cAMP receptor protein bound at a single target can activate transcription initiation at divergent promoters:: a systematic study that exploits new promoter probe plasmids [J].
El-Robh, MS ;
Busby, SJW .
BIOCHEMICAL JOURNAL, 2002, 368 (03) :835-843
[9]  
Gross C. A., 1992, TRANSCRIPTIONAL REGU, V1, P129
[10]   The functional and regulatory roles of sigma factors in transcription [J].
Gross, CA ;
Chan, C ;
Dombroski, A ;
Gruber, T ;
Sharp, M ;
Tupy, J ;
Young, B .
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1998, 63 :141-155