Effects of crystal twinning on the ability to solve a macromolecular structure using multiwavelength anomalous diffraction

被引:31
作者
Yang, F
Dauter, Z
Wlodawer, A [1 ]
机构
[1] NCI, Prot Struct Sec, Macromol Crystallog Lab, Program Struct Biol,FCRDC, Frederick, MD 21702 USA
[2] Brookhaven Natl Lab, NSLS, Upton, NY 11973 USA
[3] NCI, Synchrotron Radiat Res Sect, Macromol Crystallog Lab, Program Struct Biol, Upton, NY 11973 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2000年 / 56卷
关键词
D O I
10.1107/S0907444900007162
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of gpD, the capsid-stabilizing protein of bacteriophage lambda, was solved by multiwavelength anomalous diffraction (MAD) for a selenomethionine (SeMet) derivative of the protein at 1.8 Angstrom resolution, using crystals in space group P2(1) [Yang et al. (2000), Nature Struct. Biol. 7, 230-237]. Subsequent analysis showed that the crystals of both the original protein and the SeMet derivative were pseudomerohedrally twinned with a twinning fraction similar or equal to 0.36, owing to the near-identity of the a and c axes. An analysis of the crystal structure solution is presented and the utility of twinned crystals for solving the structure using MAD and of different phasing strategies is discussed; the results obtained with several software packages are compared.
引用
收藏
页码:959 / 964
页数:6
相关论文
共 21 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   Placement of protein and RNA structures into a 5 Å-resolution map of the 50S ribosomal subunit [J].
Ban, N ;
Nissen, P ;
Hansen, J ;
Capel, M ;
Moore, PB ;
Steitz, TA .
NATURE, 1999, 400 (6747) :841-847
[3]   On the molecular-replacement problem in the presence of merohedral twinning: structure of the N-terminal half-molecule of human lactoferrin [J].
Breyer, WA ;
Kingston, RL ;
Anderson, BF ;
Baker, EN .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1999, 55 :129-138
[4]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[5]  
Cowtan K., 1994, JOINT CCP4 ESF EACBM, V31, P34
[6]   Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods [J].
delaFortelle, E ;
Bricogne, G .
MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 :472-494
[7]   TREATMENT OF NEGATIVE INTENSITY OBSERVATIONS [J].
FRENCH, S ;
WILSON, K .
ACTA CRYSTALLOGRAPHICA SECTION A, 1978, 34 (JUL) :517-525
[8]  
FUREY W, 1995, METHOD ENZYMOL, V276, P546
[9]   DETERMINATION OF MACROMOLECULAR STRUCTURES FROM ANOMALOUS DIFFRACTION OF SYNCHROTRON RADIATION [J].
HENDRICKSON, WA .
SCIENCE, 1991, 254 (5028) :51-58
[10]   STRUCTURE OF DEOXYHEMOGLOBIN OF THE ANTARCTIC FISH PAGOTHENIA-BERNACCHII WITH AN ANALYSIS OF THE STRUCTURAL BASIS OF THE ROOT EFFECT BY COMPARISON OF THE LIGANDED AND UNLIGANDED HEMOGLOBIN STRUCTURES [J].
ITO, N ;
KOMIYAMA, NH ;
FERMI, G .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 250 (05) :648-658