The Xplor-NIH NMR molecular structure determination package

被引:1955
作者
Schwieters, CD
Kuszewski, JJ
Tjandra, N
Clore, GM
机构
[1] NIH, Div Computat Biosci, Ctr Informat Technol, Bethesda, MD 20892 USA
[2] NHLBI, Biophys Chem Lab, NIH, Bethesda, MD 20892 USA
[3] NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
关键词
D O I
10.1016/S1090-7807(02)00014-9
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We announce the availability of the Xplor-NIH software package for NMR biomolecular structure determination. This package consists of the pre-existing XPLOR program, along with many NMR-specific extensions developed at the NIH. In addition to many features which have been developed over the last 20 years, the Xplor-NIH package contains an interface with a new programmatic framework written in C++. This interface currently supports the general purpose scripting languages Python and TCL, enabling rapid development of new tools, such as new potential energy terms and new optimization methods. Support for these scripting languages also facilitates interaction with existing external programs for structure analysis, structure manipulation, visualization, and spectral analysis. (C) 2002 Elsevier Science (USA). All rights reserved.
引用
收藏
页码:65 / 73
页数:9
相关论文
共 59 条
  • [1] CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS
    BROOKS, BR
    BRUCCOLERI, RE
    OLAFSON, BD
    STATES, DJ
    SWAMINATHAN, S
    KARPLUS, M
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) : 187 - 217
  • [2] FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES
    BRUNGER, AT
    [J]. NATURE, 1992, 355 (6359) : 472 - 475
  • [3] ASSESSING THE QUALITY OF SOLUTION NUCLEAR-MAGNETIC-RESONANCE STRUCTURES BY COMPLETE CROSS-VALIDATION
    BRUNGER, AT
    CLORE, GM
    GRONENBORN, AM
    SAFFRICH, R
    NILGES, M
    [J]. SCIENCE, 1993, 261 (5119) : 328 - 331
  • [4] 3-DIMENSIONAL STRUCTURE OF PROTEINS DETERMINED BY MOLECULAR-DYNAMICS WITH INTERPROTON DISTANCE RESTRAINTS - APPLICATION TO CRAMBIN
    BRUNGER, AT
    CLORE, GM
    GRONENBORN, AM
    KARPLUS, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (11) : 3801 - 3805
  • [5] CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS
    BRUNGER, AT
    KURIYAN, J
    KARPLUS, M
    [J]. SCIENCE, 1987, 235 (4787) : 458 - 460
  • [6] Crystallography & NMR system:: A new software suite for macromolecular structure determination
    Brunger, AT
    Adams, PD
    Clore, GM
    DeLano, WL
    Gros, P
    Grosse-Kunstleve, RW
    Jiang, JS
    Kuszewski, J
    Nilges, M
    Pannu, NS
    Read, RJ
    Rice, LM
    Simonson, T
    Warren, GL
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 : 905 - 921
  • [7] Brunger AT, 1993, XPLOR MANUAL VERSION
  • [8] Brunger AT, 1988, CRYSTALLOGRAPHIC COM, V3, P126
  • [9] Three-dimensional solution structure of the 44 kDa ectodomain of SIV gp41
    Caffrey, M
    Cai, ML
    Kaufman, J
    Stahl, SJ
    Wingfield, PT
    Covell, DG
    Gronenborn, AM
    Clore, GM
    [J]. EMBO JOURNAL, 1998, 17 (16) : 4572 - 4584
  • [10] THE 3-DIMENSIONAL STRUCTURE OF ALPHA-1-PUROTHIONIN IN SOLUTION - COMBINED USE OF NUCLEAR-MAGNETIC-RESONANCE, DISTANCE GEOMETRY AND RESTRAINED MOLECULAR-DYNAMICS
    CLORE, GM
    NILGES, M
    SUKUMARAN, DK
    BRUNGER, AT
    KARPLUS, M
    GRONENBORN, AM
    [J]. EMBO JOURNAL, 1986, 5 (10) : 2729 - 2735