The site-specific installation of methyl-lysine analogs into recombinant histones

被引:378
作者
Simon, Matthew D.
Chu, Feixia
Racki, Lisa R.
de la Cruz, Cecile C.
Burlingame, Alma L.
Panning, Barbara
Narlikar, Geeta J.
Shokat, Kevan M. [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Univ Calif San Francisco, Dept Biochem, San Francisco, CA 94143 USA
[3] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
[4] Univ Calif San Francisco, Howard Hughes Med Inst, Dept Cellular & Mol Pharmacol, San Francisco, CA 94143 USA
关键词
D O I
10.1016/j.cell.2006.12.041
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Histone lysine residues can be mono-, di-, or trimethylated. These posttranslational modifications regulate the affinity of effector proteins and may also impact chromatin structure independent of their role as adaptors. In order to study histone lysine methylation, particularly in the context of chromatin, we have developed a chemical approach to install analogs of methyl lysine into recombinant proteins. This approach allows for the rapid generation of large quantities of histones in which the site and degree of methylation can be specified. We demonstrate that these methyl-lysine analogs (MLAs) are functionally similar to their natural counterparts. These methylated histones, were used to examine the influence of specific lysine methylation on the binding of effecter proteins and the rates of nucleosme remodeling. This simple method of introducing site-specific and degree-specific methylation into recombinant histones provides a powerful tool to investigate the biochemical mechanisms by which lysine methylation influences chromatin structure and function.
引用
收藏
页码:1003 / 1012
页数:10
相关论文
共 45 条
[1]   Mapping post-translational modifications of the histone variant macroH2A1 using tandem mass spectrometry [J].
Chu, FX ;
Nusinow, DA ;
Chalkely, RJ ;
Plath, K ;
Panning, B ;
Burlingame, AL .
MOLECULAR & CELLULAR PROTEOMICS, 2006, 5 (01) :194-203
[2]   Critical role for the histone H4N terminus in nucleosome remodeling by ISWI [J].
Clapier, CR ;
Längst, G ;
Corona, DFV ;
Becker, PB ;
Nightingale, KP .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (03) :875-883
[3]   A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI [J].
Clapier, CR ;
Nightingale, KP ;
Becker, PB .
NUCLEIC ACIDS RESEARCH, 2002, 30 (03) :649-655
[4]   Regulated nucleosome mobility and the histone code [J].
Cosgrove, MS ;
Boeke, JD ;
Wolberger, C .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (11) :1037-1043
[5]   ACCURATE TRANSCRIPTION INITIATION BY RNA POLYMERASE-II IN A SOLUBLE EXTRACT FROM ISOLATED MAMMALIAN NUCLEI [J].
DIGNAM, JD ;
LEBOVITZ, RM ;
ROEDER, RG .
NUCLEIC ACIDS RESEARCH, 1983, 11 (05) :1475-1489
[6]   Acf1, the largest subunit of CHRAC, regulates ISWI-induced nucleosome remodelling [J].
Eberharter, A ;
Ferrari, S ;
Längst, G ;
Straub, T ;
Imhof, A ;
Varga-Weisz, P ;
Wilm, M ;
Becker, PB .
EMBO JOURNAL, 2001, 20 (14) :3781-3788
[7]   Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 bv Polvcomb and HP1 chromodomains [J].
Fischle, W ;
Wang, YM ;
Jacobs, SA ;
Kim, YC ;
Allis, CD ;
Khorasanizadeh, S .
GENES & DEVELOPMENT, 2003, 17 (15) :1870-1881
[8]   DECREASING THE BASICITY OF THE ACTIVE-SITE BASE, LYS-258, OF ESCHERICHIA-COLI ASPARTATE-AMINOTRANSFERASE BY REPLACEMENT WITH GAMMA-THIALYSINE [J].
GLOSS, LM ;
KIRSCH, JF .
BIOCHEMISTRY, 1995, 34 (12) :3990-3998
[9]   Heterochromatin and epigenetic control of gene expression [J].
Grewal, SIS ;
Moazed, D .
SCIENCE, 2003, 301 (5634) :798-802
[10]   Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF [J].
Hamiche, A ;
Kang, JG ;
Dennis, C ;
Xiao, H ;
Wu, C .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (25) :14316-14321