Crystal structure of a thermophilic cytochrome P450 from the archaeon Sulfolobus solfataricus

被引:175
作者
Yano, JK
Koo, LS
Schuller, DJ
Li, HY
de Montellano, PRO
Poulos, TL [1 ]
机构
[1] Univ Calif Irvine, Dept Mol Biol & Biochem, Irvine, CA 92697 USA
[2] Univ Calif Irvine, Program Macromol Struct, Irvine, CA 92697 USA
[3] Univ Calif San Francisco, Sch Pharm, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
关键词
D O I
10.1074/jbc.M004281200
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The structure of the first P450 identified in Archaea, CYP119 from Sulfolobus solfataricus, has been solved in two different crystal forms that differ by the ligand (imidazole or 4-phenylimidazole) coordinated to the heme iron. A comparison of the two structures reveals an unprecedented rearrangement of the active site to adapt to the different size and shape of ligands bound to the heme iron. These changes involve unraveling of the F helix C-terminal segment to extend a loop structure connecting the F and G helices, allowing the longer loop to dip down into the active site and interact with the smaller imidazole ligand, A comparison of CYP119 with P450cam and P450eryF indicates an extensive clustering of aromatic residues may provide the structural basis for the enhanced thermal stability of CYP119. An additional feature of the 4-phenylimidazole-bound structure is a zinc ion tetrahedrally bound by symmetry-related His and Glu residues.
引用
收藏
页码:31086 / 31092
页数:7
相关论文
共 39 条
[1]   Analysis of zinc binding sites in protein crystal structures [J].
Alberts, IL ;
Nadassy, K ;
Wodak, SJ .
PROTEIN SCIENCE, 1998, 7 (08) :1700-1716
[2]   CHARACTERIZATION OF SACCHAROPOLYSPORA-ERYTHRAEA CYTOCHROME-P-450 GENES AND ENZYMES, INCLUDING 6-DEOXYERYTHRONOLIDE-B HYDROXYLASE [J].
ANDERSEN, JF ;
HUTCHINSON, CR .
JOURNAL OF BACTERIOLOGY, 1992, 174 (03) :725-735
[3]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[4]   Homology modeling, molecular dynamics simulations, and analysis of CYP119, a P450 enzyme from extreme acidothermophilic archaeon Sulfolobus solfataricus [J].
Chang, YT ;
Loew, G .
BIOCHEMISTRY, 2000, 39 (10) :2484-2498
[5]   A single-point mutation in the extreme heat- and pressure-resistant Sso7d protein from Sulfolobus solfataricus leads to a major rearrangement of the hydrophobic core [J].
Consonni, R ;
Santomo, L ;
Fusi, P ;
Tortora, P ;
Zetta, L .
BIOCHEMISTRY, 1999, 38 (39) :12709-12717
[6]   STRUCTURE OF CYTOCHROME P450ERYF INVOLVED IN ERYTHROMYCIN BIOSYNTHESIS [J].
CUPPVICKERY, JR ;
POULOS, TL .
NATURE STRUCTURAL BIOLOGY, 1995, 2 (02) :144-153
[7]   N-(2-ferrocene-ethyl)maleimide: A new electroactive sulphydryl-specific reagent for cysteine-containing peptides and proteins [J].
DiGleria, K ;
Hill, HAO ;
Wong, LL .
FEBS LETTERS, 1996, 390 (02) :142-144
[8]   SETOR - HARDWARE-LIGHTED 3-DIMENSIONAL SOLID MODEL REPRESENTATIONS OF MACROMOLECULES [J].
EVANS, SV .
JOURNAL OF MOLECULAR GRAPHICS, 1993, 11 (02) :134-&
[9]   PHASES-95: A program package for processing and analyzing diffraction data from macromolecules [J].
Furey, W ;
Swaminathan, S .
MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :590-+
[10]   Sequence, overproduction and purification of the family 11 endo-β-1,4-xylanase encoded by the xyl1 gene of Streptomyces sp S38 [J].
Georis, J ;
Giannotta, F ;
Lamotte-Brasseur, J ;
Devreese, B ;
Van Beeumen, J ;
Granier, B ;
Frère, JM .
GENE, 1999, 237 (01) :123-133