Conjuring SNPs to detect associations

被引:22
作者
Clark, Andrew G. [1 ]
Li, Jian [1 ]
机构
[1] Cornell Univ, Dept Genet & Mol Biol, Ithaca, NY 14853 USA
关键词
D O I
10.1038/ng0707-815
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Human genome-wide association studies pose a challenge in identifying significant disease associations from nearly half a million statistical tests. A new report describes an especially promising approach, recently applied to the Wellcome Trust Case Control Consortium data sets, that uses the correlated structure of genomic variation to impute genotypes at missing sites and to test association with both observed and imputed SNPs.
引用
收藏
页码:815 / 816
页数:2
相关论文
共 12 条
[1]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[2]   Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [J].
Burton, Paul R. ;
Clayton, David G. ;
Cardon, Lon R. ;
Craddock, Nick ;
Deloukas, Panos ;
Duncanson, Audrey ;
Kwiatkowski, Dominic P. ;
McCarthy, Mark I. ;
Ouwehand, Willem H. ;
Samani, Nilesh J. ;
Todd, John A. ;
Donnelly, Peter ;
Barrett, Jeffrey C. ;
Davison, Dan ;
Easton, Doug ;
Evans, David ;
Leung, Hin-Tak ;
Marchini, Jonathan L. ;
Morris, Andrew P. ;
Spencer, Chris C. A. ;
Tobin, Martin D. ;
Attwood, Antony P. ;
Boorman, James P. ;
Cant, Barbara ;
Everson, Ursula ;
Hussey, Judith M. ;
Jolley, Jennifer D. ;
Knight, Alexandra S. ;
Koch, Kerstin ;
Meech, Elizabeth ;
Nutland, Sarah ;
Prowse, Christopher V. ;
Stevens, Helen E. ;
Taylor, Niall C. ;
Walters, Graham R. ;
Walker, Neil M. ;
Watkins, Nicholas A. ;
Winzer, Thilo ;
Jones, Richard W. ;
McArdle, Wendy L. ;
Ring, Susan M. ;
Strachan, David P. ;
Pembrey, Marcus ;
Breen, Gerome ;
St Clair, David ;
Caesar, Sian ;
Gordon-Smith, Katherine ;
Jones, Lisa ;
Fraser, Christine ;
Green, Elain K. .
NATURE, 2007, 447 (7145) :661-678
[3]   Multiple rare Alleles contribute to low plasma levels of HDL cholesterol [J].
Cohen, JC ;
Kiss, RS ;
Pertsemlidis, A ;
Marcel, YL ;
McPherson, R ;
Hobbs, HH .
SCIENCE, 2004, 305 (5685) :869-872
[4]  
De Bakker Paul I W, 2006, Pac Symp Biocomput, P478, DOI 10.1142/9789812701626_0044
[5]   Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays [J].
Komura, Daisuke ;
Shen, Fan ;
Ishikawa, Shumpei ;
Fitch, Karen R. ;
Chen, Wenwei ;
Zhang, Jane ;
Liu, Guoying ;
Ihara, Sigeo ;
Nakamura, Hiroshi ;
Hurles, Matthew E. ;
Lee, Charles ;
Scherer, Stephen W. ;
Jones, Keith W. ;
Shapero, Michael H. ;
Huang, Jing ;
Aburatani, Hiroyuki .
GENOME RESEARCH, 2006, 16 (12) :1575-1584
[6]   A new multipoint method for genome-wide association studies by imputation of genotypes [J].
Marchini, Jonathan ;
Howie, Bryan ;
Myers, Simon ;
McVean, Gil ;
Donnelly, Peter .
NATURE GENETICS, 2007, 39 (07) :906-913
[7]   Evaluating and improving power in whole-genome association studies using fixed marker sets [J].
Pe'er, Itsik ;
de Bakker, Paul I. W. ;
Maller, Julian ;
Yelensky, Roman ;
Altshuler, David ;
Daly, Mark J. .
NATURE GENETICS, 2006, 38 (06) :663-667
[8]   Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL [J].
Romeo, Stefano ;
Pennacchio, Len A. ;
Fu, Yunxin ;
Boerwinkle, Eric ;
Tybjaerg-Hansen, Anne ;
Hobbs, Helen H. ;
Cohen, Jonathan C. .
NATURE GENETICS, 2007, 39 (04) :513-516
[9]   Score tests for association between traits and haplotypes when linkage phase is ambiguous [J].
Schaid, DJ ;
Rowland, CM ;
Tines, DE ;
Jacobson, RM ;
Poland, GA .
AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 70 (02) :425-434
[10]   A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants [J].
Scott, Laura J. ;
Mohlke, Karen L. ;
Bonnycastle, Lori L. ;
Willer, Cristen J. ;
Li, Yun ;
Duren, William L. ;
Erdos, Michael R. ;
Stringham, Heather M. ;
Chines, Peter S. ;
Jackson, Anne U. ;
Prokunina-Olsson, Ludmila ;
Ding, Chia-Jen ;
Swift, Amy J. ;
Narisu, Narisu ;
Hu, Tianle ;
Pruim, Randall ;
Xiao, Rui ;
Li, Xiao-Yi ;
Conneely, Karen N. ;
Riebow, Nancy L. ;
Sprau, Andrew G. ;
Tong, Maurine ;
White, Peggy P. ;
Hetrick, Kurt N. ;
Barnhart, Michael W. ;
Bark, Craig W. ;
Goldstein, Janet L. ;
Watkins, Lee ;
Xiang, Fang ;
Saramies, Jouko ;
Buchanan, Thomas A. ;
Watanabe, Richard M. ;
Valle, Timo T. ;
Kinnunen, Leena ;
Abecasis, Gonalo R. ;
Pugh, Elizabeth W. ;
Doheny, Kimberly F. ;
Bergman, Richard N. ;
Tuomilehto, Jaakko ;
Collins, Francis S. ;
Boehnke, Michael .
SCIENCE, 2007, 316 (5829) :1341-1345