Chitinase-like proteins encoded in the genome of the pea aphid, Acyrthosiphon pisum

被引:62
作者
Nakabachi, A. [1 ]
Shigenobu, S. [2 ,3 ,4 ]
Miyagishima, S. [1 ]
机构
[1] RIKEN, Adv Sci Inst, Wako, Saitama 3510198, Japan
[2] Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ 08544 USA
[3] JST, PRESTO, Kawaguchi, Saitama, Japan
[4] Natl Inst Nat Sci, Okazaki Inst Integrat Biosci, Okazaki, Aichi 4448787, Japan
关键词
chitinase; glycosyl hydrolase; aphid; genome; phylogenetic analysis; BETA-N-ACETYLGLUCOSAMINIDASE; BOMBYX-MORI; BMCHI-H; FAMILY; INSECT; GENE; BACTERIAL; INSIGHTS;
D O I
10.1111/j.1365-2583.2009.00985.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In insects, chitinases play an essential role in the degradation of old exoskeleton and turnover of the gut lining. In silico screening of the entire genome of the pea aphid (Hemimetabola), Acyrthosiphon pisum, detected nine genes encoding putative chitinase-like proteins, including six enzymatically active chitinases, one imaginal disc growth factor, and one endo-beta-N-acetylglucosaminidase. Screening of the genomes of Aedes aegypti, Anopheles gambiae, Apis mellifera, Bombyx mori, Culex quinquefasciatus, Drosophila melanogaster, Nasonia vitripennis, Pediculus humanus corporis, and Tribolium castaneum suggested repeated gene duplications in holometabolous lineages. Quantitative reverse transcription-PCR demonstrated the expression of four and two distinct chitinase-like genes of A. pisum to be highly up-regulated in the embryo and the midgut, respectively, suggesting specific roles in these pea aphid tissues.
引用
收藏
页码:175 / 185
页数:11
相关论文
共 39 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   Family 18 chitinase-oligosaccharide substrate interaction:: subsite preference and anomer selectivity of Serratia marcescens chitinase A [J].
Aronson, NN ;
Halloran, BA ;
Alexyev, MF ;
Amable, L ;
Madura, JD ;
Pasupulati, L ;
Worth, C ;
Van Roey, P .
BIOCHEMICAL JOURNAL, 2003, 376 :87-95
[3]   How death shapes life during development [J].
Baehrecke, EH .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2002, 3 (10) :779-787
[4]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
[5]   Improved prediction of signal peptides: SignalP 3.0 [J].
Bendtsen, JD ;
Nielsen, H ;
von Heijne, G ;
Brunak, S .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 340 (04) :783-795
[6]   Midgut adaptation and digestive enzyme distribution in a phloem feeding insect, the pea aphid Acyrthosiphon pisum [J].
Cristofoletti, PT ;
Ribeiro, AF ;
Deraison, C ;
Rahbé, Y ;
Terra, WR .
JOURNAL OF INSECT PHYSIOLOGY, 2003, 49 (01) :11-24
[7]   The BmChi-h gene, a bacterial-type chitinase gene of Bombyx mori, encodes a functional exochitinase that plays a role in the chitin degradation during the molting process [J].
Daimon, T ;
Katsuma, S ;
Iwanaga, M ;
Kang, WK ;
Shimada, T .
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2005, 35 (10) :1112-1123
[8]   A Bombyx mori gene, BmChi-h, encodes a protein homologous to bacterial and baculovirus chitinases [J].
Daimon, T ;
Hamada, K ;
Mita, K ;
Okano, K ;
Suzuki, MG ;
Kobayashi, M ;
Shimada, T .
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2003, 33 (08) :749-759
[9]   Chitinases are a multi-gene family in Aedes, Anopheles and Drosophila [J].
de la Vega, H ;
Specht, CA ;
Liu, Y ;
Robbins, PW .
INSECT MOLECULAR BIOLOGY, 1998, 7 (03) :233-239
[10]   Creating a honey bee consensus gene set [J].
Elsik, Christine G. ;
Mackey, Aaron J. ;
Reese, Justin T. ;
Milshina, Natalia V. ;
Roos, David S. ;
Weinstock, George M. .
GENOME BIOLOGY, 2007, 8 (01)