Scaffold searching: Automated identification of similar ring systems for the design of combinatorial libraries

被引:19
作者
Bohl, M
Dunbar, J
Gifford, EM
Heritage, T
Wild, DJ
Willett, P [1 ]
Wilton, DJ
机构
[1] Univ Sheffield, Krebs Inst Biomolec Res, Sheffield S10 2TN, S Yorkshire, England
[2] Univ Sheffield, Dept Informat Studies, Sheffield S10 2TN, S Yorkshire, England
来源
QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIPS | 2002年 / 21卷 / 06期
关键词
combinatorial libraries; geometric searching; ring systems; scaffold searching; shape similarity;
D O I
10.1002/qsar.200290001
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Rigid ring systems can be used to position receptor-binding functional groups in 3D space and they thus play an increasingly important role in the design of combinatorial libraries. This paper discusses the use of shape-similarity methods to identify ring systems that are structurally similar to, and aligned with, a user-defined target ring system. These systems can be used as alternative scaffolds for the construction of a combinatorial library.
引用
收藏
页码:590 / 597
页数:8
相关论文
共 28 条
  • [1] EFFICIENT EXACT SOLUTION OF THE RING PERCEPTION PROBLEM
    BALDUCCI, R
    PEARLMAN, RS
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1994, 34 (04): : 822 - 831
  • [2] GRAPHICAL REPRESENTATION FOR AUTOMATED RETRIEVAL OF A CLASS OF FUSED 6-RINGS
    BEDROSIAN, SD
    MILNE, MB
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1977, 17 (01): : 47 - 49
  • [3] The properties of known drugs .1. Molecular frameworks
    Bemis, GW
    Murcko, MA
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 1996, 39 (15) : 2887 - 2893
  • [4] HOW SIMILAR IS A MOLECULE TO ANOTHER - AN ELECTRON-DENSITY MEASURE OF SIMILARITY BETWEEN 2 MOLECULAR-STRUCTURES
    CARBO, R
    LEYDA, L
    ARNAU, M
    [J]. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 1980, 17 (06) : 1185 - 1189
  • [5] Virtual compound libraries: A new approach to decision making in molecular discovery research
    Cramer, RD
    Patterson, DE
    Clark, RD
    Soltanshahi, F
    Lawless, MS
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1998, 38 (06): : 1010 - 1023
  • [6] DEAN PM, 1998, DESIGNING BIOACTIVE, P199
  • [7] BEILSTEIN RING SEARCH SYSTEM .1. GENERAL DESIGN
    DOMOKOS, L
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1993, 33 (05): : 663 - 667
  • [8] REVIEW OF RING PERCEPTION ALGORITHMS FOR CHEMICAL GRAPHS
    DOWNS, GM
    GILLET, VJ
    HOLLIDAY, JD
    LYNCH, MF
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1989, 29 (03): : 172 - 187
  • [9] RAPID EVALUATION OF SHAPE SIMILARITY USING GAUSSIAN FUNCTIONS
    GOOD, AC
    RICHARDS, WG
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1993, 33 (01): : 112 - 116
  • [10] CONVERSION OF WISWESSER LINE NOTATIONS TO RING CODES .1. CONVERSION OF RING-SYSTEMS
    GRANITO, CE
    ROBERTS, S
    GIBSON, GW
    [J]. JOURNAL OF CHEMICAL DOCUMENTATION, 1972, 12 (03): : 190 - &