Use of 15N-NMR to resolve molecular details in isotopically-enriched carbohydrates:: sequence-specific observations in hyaluronan oligomers up to decasaccharides

被引:51
作者
Blundell, CD
DeAngelis, PL
Day, AJ
Almond, A
机构
[1] Univ Oxford, Dept Biochem, MRC, Immunochem Unit, Oxford OX1 3QU, England
[2] Univ Oklahoma, Hlth Sci Ctr, Dept Biochem & Mol Biol, Oklahoma City, OK USA
基金
美国国家科学基金会; 英国医学研究理事会; 英国生物技术与生命科学研究理事会;
关键词
end-effect; N-15 isotope incorporation; hyaluronan; NMR; triple-resonance;
D O I
10.1093/glycob/cwh117
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The glycosaminoglycan hyaluronan is a vital structural component of extracellular matrices with diverse biological functions, a molecular understanding of which requires a detailed description of secondary and tertiary solution structures. Various models of these structures have been proposed on the basis of H-1 and C-13 natural-abundance nuclear magnetic resonance (NMR) experiments, but resonance overlap limits further progress with these techniques. We have therefore produced N-15- and C-13- isotopically-labeled hyaluronan oligosaccharides and applied triple-resonance and 3D experiments to overcome this restriction. Spectra recorded on oligosaccharides (of lengths 4, 6, 8, 10, and 12 sugar rings), reveal that the N-15 nucleus allows resolution of the amide groups in a decamer at high magnetic field, whereas C-13 natural-abundance NMR can only resolve internal groups up to hexamers. Complete N-15 sequence- specific assignments of these oligosaccharides indicate that the chemical shift dispersion can be explained by end-effects, which are seen even in the middle of octamers. Triple- resonance and N-15-edited 3D experiments, among the first of their kind in oligosaccharides, have been used to achieve resolution of ring H-1 and C-13 nuclei where not possible previously. The subtle chemical shift perturbations resolved suggest that different conformations and dynamics occur at the ends, which may contribute to the range of biological activities displayed by varying lengths of hyaluronan. N-15-NMR in carbohydrates has not received much attention before, however, this study demonstrates it has clear advantages for achieving resolution and assessing dynamic motion. These conclusions are likely to be applicable to the study of the structure and dynamics of other nitrogen-containing carbohydrates.
引用
收藏
页码:999 / 1009
页数:11
相关论文
共 57 条
[1]   Dynamic exchange between stabilized conformations predicted for hyaluronan tetrasaccharides: comparison of molecular dynamics simulations with available NMR data [J].
Almond, A ;
Brass, A ;
Sheehan, JK .
GLYCOBIOLOGY, 1998, 8 (10) :973-980
[2]   Molecular dynamics simulations of the two disaccharides of hyaluronan in aqueous solution [J].
Almond, A ;
Sheehan, JK ;
Brass, A .
GLYCOBIOLOGY, 1997, 7 (05) :597-604
[3]   Oligosaccharides as model systems for understanding water-biopolymer interaction: Hydrated dynamics of a hyaluronan decamer [J].
Almond, A ;
Brass, A ;
Sheehan, JK .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (23) :5634-5640
[4]   Deducing polymeric structure from aqueous molecular dynamics simulations of oligosaccharides: Predictions from simulations of hyaluronan tetrasaccharides compared with hydrodynamic and X-ray fibre diffraction data [J].
Almond, A ;
Brass, A ;
Sheehan, JK .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 284 (05) :1425-1437
[5]   QUANTITATIVE-DETERMINATION OF MONOSACCHARIDES IN GLYCOPROTEINS BY HIGH-PERFORMANCE LIQUID-CHROMATOGRAPHY WITH HIGHLY SENSITIVE FLUORESCENCE DETECTION [J].
ANUMULA, KR .
ANALYTICAL BIOCHEMISTRY, 1994, 220 (02) :275-283
[6]   STRUCTURE FOR HYALURONIC-ACID [J].
ATKINS, EDT ;
SHEEHAN, JK .
NATURE-NEW BIOLOGY, 1972, 235 (60) :253-&
[7]   The link module from ovulation- and inflammation-associated protein TSG-6 changes conformation on hyaluronan binding [J].
Blundell, CD ;
Mahoney, DJ ;
Almond, A ;
DeAngelis, PL ;
Kahmann, JD ;
Teriete, P ;
Pickford, AR ;
Campbell, ID ;
Day, AJ .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (49) :49261-49270
[8]   Hyaluronan - Is bigger better? [J].
Camenisch, TD ;
McDonald, JA .
AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY, 2000, 23 (04) :431-433
[9]   PERSISTENCE LENGTH OF HYALURONIC-ACID - ESTIMATE FROM SMALL-ANGLE X-RAY-SCATTERING AND INTRINSIC-VISCOSITY [J].
CLELAND, RL .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1977, 180 (01) :57-68
[10]   H-1-NMR OF GLYCOSAMINOGLYCANS AND HYALURONIC-ACID OLIGOSACCHARIDES IN AQUEOUS-SOLUTION - THE AMIDE PROTON ENVIRONMENT [J].
COWMAN, MK ;
COZART, D ;
NAKANISHI, K ;
BALAZS, EA .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1984, 230 (01) :203-212