DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

被引：277

作者：

Ceroni, Alessio

Passerini, Andrea

Vullo, Alessandro

Frasconi, Paolo

机构：

[1] Univ Florence, Machine Learning & Neural Networks Grp, Dipartimento Sistemi & Informat, I-50139 Florence, Italy

[2] Univ Coll Dublin, Sch Comp Sci & Informat, Dublin 4, Ireland

来源：

NUCLEIC ACIDS RESEARCH | 2006年 / 34卷

关键词：

D O I：

10.1093/nar/gkl266

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

DISULFIND is a server for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Optionally, disulfide connectivity can be predicted from sequence and a bonding state assignment given as input. The output is a simple visualization of the assigned bonding state ( with confidence degrees) and the most likely connectivity patterns. The server is available at http://disulfind.dsi.unifi.it/.

引用

页码：W177 / W181

页数：5

共 20 条

[1]

[Anonymous], 2004, Adv. Neural Inf. Process Syst

[2] Exploiting the past and the future in protein secondary structure prediction [J].

Baldi, P ;

Brunak, S ;

Frasconi, P ;

Soda, G ;

Pollastri, G .

BIOINFORMATICS, 1999, 15 (11) :937-946

[3] Predicting the disulfide bonding state of cysteines with combinations of kernel machines [J].

Ceroni, A ;

Frasconi, P ;

Passerini, A ;

Vullo, A .

JOURNAL OF VLSI SIGNAL PROCESSING SYSTEMS FOR SIGNAL IMAGE AND VIDEO TECHNOLOGY, 2003, 35 (03) :287-295

[4] Anger expression toward parents and depressive symptoms among undergraduates in Taiwan [J].

Cheng, HL ;

Mallinckrodt, B ;

Wu, LC .

COUNSELING PSYCHOLOGIST, 2005, 33 (01) :72-97

[5] Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching [J].

Cheng, JL ;

Saigo, H ;

Baldi, P .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2006, 62 (03) :617-629

[6]

Fariselli P, 1999, PROTEINS, V36, P340

[7] Prediction of disulfide connectivity in proteins [J].

Fariselli, P ;

Casadio, R .

BIOINFORMATICS, 2001, 17 (10) :957-964

[8] DiANNA:: a web server for disulfide connectivity prediction [J].

Ferrè, F ;

Clote, P .

NUCLEIC ACIDS RESEARCH, 2005, 33 :W230-W232

[9] Disulfide connectivity prediction using secondary structure information and diresidue frequencies [J].

Ferrè, F ;

Clote, P .

BIOINFORMATICS, 2005, 21 (10) :2336-2346

[10] Predicting the oxidation state of cysteines by multiple sequence alignment [J].

Fiser, A ;

Simon, I .

BIOINFORMATICS, 2000, 16 (03) :251-256

← 1 2 →