Acidobactetia phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum

被引:270
作者
Barns, Susan M. [1 ]
Cain, Elizabeth C. [1 ]
Sommerville, Leslie [1 ]
Kuske, Cheryl R. [1 ]
机构
[1] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM 87545 USA
关键词
D O I
10.1128/AEM.02012-06
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The abundance and composition of bacteria of the phylum Acidobacteria were surveyed in subsurface sediments from uranium-contaminated sites using amplification of 16S rRNA genes followed by clone/sequence analysis. Analysis of sequences from this study and public databases produced a revised and greatly expanded phylogeny of the Acidobacteria phylum consisting of 26 subgroups.
引用
收藏
页码:3113 / 3116
页数:4
相关论文
共 20 条
  • [1] Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
    Anderson, RT
    Vrionis, HA
    Ortiz-Bernad, I
    Resch, CT
    Long, PE
    Dayvault, R
    Karp, K
    Marutzky, S
    Metzler, DR
    Peacock, A
    White, DC
    Lowe, M
    Lovley, DR
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (10) : 5884 - 5891
  • [2] Barns SM, 1999, APPL ENVIRON MICROB, V65, P1731
  • [3] CAIN EC, 2006, 065555 LOS AL NAT LA
  • [4] The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
    Cole, JR
    Chai, B
    Farris, RJ
    Wang, Q
    Kulam, SA
    McGarrell, DM
    Garrity, GM
    Tiedje, JM
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D294 - D296
  • [5] Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste
    Fields, MW
    Yan, TF
    Rhee, SK
    Carroll, SL
    Jardine, PM
    Watson, DB
    Criddle, CS
    Zhou, JZ
    [J]. FEMS MICROBIOLOGY ECOLOGY, 2005, 53 (03) : 417 - 428
  • [6] Microbiological characteristics in a zero-valent iron reactive barrier
    Gu, BH
    Watson, DB
    Wu, LY
    Phillips, DH
    White, DC
    Zhou, JZ
    [J]. ENVIRONMENTAL MONITORING AND ASSESSMENT, 2002, 77 (03) : 293 - 309
  • [7] Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    Hugenholtz, P
    Goebel, BM
    Pace, NR
    [J]. JOURNAL OF BACTERIOLOGY, 1998, 180 (18) : 4765 - 4774
  • [8] Simultaneous recovery of RNA and DNA from soils and sediments
    Hurt, RA
    Qiu, XY
    Wu, LY
    Roh, Y
    Palumbo, AV
    Tiedje, JM
    Zhou, JH
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (10) : 4495 - 4503
  • [9] In situ bioreduction of technetium and uranium in a nitrate-contaminated aquifer
    Istok, JD
    Senko, JM
    Krumholz, LR
    Watson, D
    Bogle, MA
    Peacock, A
    Chang, YJ
    White, DC
    [J]. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2004, 38 (02) : 468 - 475