Azulene-to-naphthalene rearrangement: The Car-Parrinello metadynamics method explores various mechanisms

被引:74
作者
Stirling, A [1 ]
Iannuzzi, M [1 ]
Laio, A [1 ]
Parrinello, M [1 ]
机构
[1] ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland
关键词
ab initio calculations; azulene; metadynamics; molecular dynamics; reaction mechanisms;
D O I
10.1002/cphc.200400063
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We studied the thermal intramolecular and radical rearrangement of azulene to naphthalene by employing a novel metadynamics method based on Car-Parrinello molecular dynamics. We demonstrate that relatively short simulations can provide us with several possible reaction mechanisms for the rearrangement. We show that different choices of the collective coordinates can steer the reaction along different pathways, thus offering the possibility of choosing the most probable mechanism. We consider herein three intramolecular mechanisms and two radical path-ways. We found the norcaradiene pathway to be the preferable intramolecular mechanism, whereas the spiran mechanism is the favored radical route. We obtained high activation energies for all the intramolecular pathways (81.5-98.6 kcal mol(-1)), whereas the radical routes have activation energies of 24-39 kcal mol(-1). The calculations have also resulted in elementary steps and intermediates not yet considered. A few attractive features of the metadynamics method in studying chemical reactions are pointed out.
引用
收藏
页码:1558 / 1568
页数:11
相关论文
共 47 条
  • [1] THERMOLYSIS OF [1-13C]-2-METHYLAZULENE AND MECHANISM OF THE AZULENE TO NAPHTHALENE REARRANGEMENT
    ALDER, RW
    WHITESIDE, RW
    WHITTAKER, G
    WILSHIRE, C
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1979, 101 (03) : 629 - 632
  • [2] The azulene-to-naphthalene rearrangement revisited: a DFT study of intramolecular and radical-promoted mechanisms
    Alder, RW
    East, SP
    Harvey, JN
    Oakley, MT
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (18) : 5375 - 5387
  • [3] THERMAL REARRANGEMENT OF SOME 1-SUBSTITUTED AND 2-SUBSTITUTED AZULENES TO NAPHTHALENES
    ALDER, RW
    WILSHIRE, C
    [J]. JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1975, (13): : 1464 - 1468
  • [4] THERMAL REARRANGEMENTS OF AZULENES TO NAPHTHALENES
    ALDER, RW
    WHITTAKER, G
    [J]. JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1975, (07): : 714 - 723
  • [5] Dynamics-driven reaction pathway in an intramolecular rearrangement
    Ammal, SC
    Yamataka, H
    Aida, M
    Dupuis, M
    [J]. SCIENCE, 2003, 299 (5612) : 1555 - 1557
  • [6] AZULENE-NAPHTHALENE REARRANGEMENT - INVOLVEMENT OF 1-PHENYLBUTEN-3-YNES AND 4-PHENYL-1,3-BUTADIENYLIDENE
    BECKER, J
    WENTRUP, C
    KATZ, E
    ZELLER, KP
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1980, 102 (15) : 5110 - 5112
  • [7] Transition path sampling: Throwing ropes over rough mountain passes, in the dark
    Bolhuis, PG
    Chandler, D
    Dellago, C
    Geissler, PL
    [J]. ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2002, 53 : 291 - 318
  • [8] THERMAL-ISOMERIZATION OF AZULENE TO NAPHTHALENE IN SHOCK-WAVES
    BROUWER, L
    TROE, J
    [J]. INTERNATIONAL JOURNAL OF CHEMICAL KINETICS, 1988, 20 (05) : 379 - 386
  • [9] BURGER U, 1987, CHIMIA, V41, P26
  • [10] UNIFIED APPROACH FOR MOLECULAR-DYNAMICS AND DENSITY-FUNCTIONAL THEORY
    CAR, R
    PARRINELLO, M
    [J]. PHYSICAL REVIEW LETTERS, 1985, 55 (22) : 2471 - 2474