The complete chloroplast genome and phylogenetic analysis of Veratrum mengtzeanum Loes. F. (Liliaceae)

被引：4

作者：

Han, Li-Jun ^{[1
]}

Liu, Ying-Ying ^{[1
,2
]}

Zhang, Ying-Min ^{[1
]}

Yang, Cong-Wei ^{[1
]}

Qian, Zi-Gang ^{[1
,3
]}

Li, Guo-Dong ^{[1
,3
]}

机构：

[1] Yunnan Univ Chinese Med, Fac Tradit Chinese Pharm, Kunming 650500, Yunnan, Peoples R China

[2] Yunnan Inst Food & Drug, Kunming, Yunnan, Peoples R China

[3] Yunnan Univ Chinese Med, Yunnan Key Lab Dai & Yi Med, Kunming 650500, Yunnan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Veratrum mengtzeanum; chloroplast genome; Liliaceae; phylogenetic analysis;

D O I：

10.1080/23802359.2019.1693926

中图分类号：

Q3 [遗传学];

学科分类号：

071007 [遗传学];

摘要：

Veratrum mengtzeanum Loes. F. is a medicinal plant belonging to the genus Veratrum (Liliaceae). In the present study, we assembled and characterized the complete chloroplast (cp) genome of this species. The chloroplast genome is 152,051 bp in length, with one large single copy (LSC) region and one small single copy (SSC) region of 82,112 bp and 17,544 bp, respectively; two inverted repeat (IR) regions of 26,198 bp. It contains 131 annotated genes, including 85 protein-coding genes (PCGs), 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis indicated that V. mengtzeanum was closely related to Veratrum japonicum with 100% bootstrap value.

引用

页码：4170 / 4171

页数：2

共 9 条

[1]

NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].

Dierckxsens, Nicolas ;

Mardulyn, Patrick ;

Smits, Guillaume .

NUCLEIC ACIDS RESEARCH, 2017, 45 (04)

[2]

Gu LS, 2018, CHIN WLID PLANT RESO, V37, P53

[3]

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[4]

Seven new veratramine-type alkaloids with potent analgesic effect from Veratrum taliense [J].

Li, Qiong ;

Zhao, Yun-Li ;

Long, Cheng-Bo ;

Zhu, Pei-Feng ;

Liu, Ya-Ping ;

Luo, Xiao-Dong .

JOURNAL OF ETHNOPHARMACOLOGY, 2019, 244

[5]

IMEx: Imperfect microsatellite extractor [J].

Mudunuri, Suresh B. ;

Nagarajaram, Hampapathalu A. .

BIOINFORMATICS, 2007, 23 (10) :1181-1187

[6]

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies [J].

Stamatakis, Alexandros .

BIOINFORMATICS, 2014, 30 (09) :1312-1313

[7]

GeSeq - versatile and accurate annotation of organelle genomes [J].

Tillich, Michael ;

Lehwark, Pascal ;

Pellizzer, Tommaso ;

Ulbricht-Jones, Elena S. ;

Fischer, Axel ;

Bock, Ralph ;

Greiner, Stephan .

NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) :W6-W11

[8]

Yin ZL, 2014, YUNNAN J TRADIT CHIN, V35, P60

[9]

Ying Z.L., 2016, YUNNAN U TRADIT CHIN, V37, P54

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