In-house phase determination of the lima bean trypsin inhibitor:: a low-resolution sulfur-SAD case

被引:48
作者
Debreczeni, JE
Bunkóczi, G
Girmann, B
Sheldrick, GM [1 ]
机构
[1] Univ Gottingen, Lehrstuhl Strukt Chem, D-3400 Gottingen, Germany
[2] Univ Gottingen, Inst Organ Chem, D-3400 Gottingen, Germany
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 2003年 / 59卷
关键词
D O I
10.1107/S0907444902020917
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
SAD (single-wavelength anomalous diffraction) has enormous potential for phasing proteins using only the anomalous signal of the almost ubiquitous native sulfur, but requires extremely precise data. The previously unknown structure of the lima bean trypsin inhibitor (LBTI) was solved using highly redundant data collected to 3 Angstrom using a CCD detector with a rotating-anode generator and three-circle goniometer. The seven 'super-S' atoms (disulfide bridges) were located by dual-space recycling with SHELXD and the high solvent content enabled the density-modification program SHELXE to generate high-quality maps despite the modest resolution. Subsequently, a 2.05 Angstrom synchrotron data set was collected and used for further phase extension and structure refinement.
引用
收藏
页码:393 / 395
页数:3
相关论文
共 25 条
  • [1] Birk Y, 1976, Methods Enzymol, V45, P707
  • [2] Structure of the macrocycle thiostrepton solved using the anomalous dispersion contribution of sulfur
    Bond, CS
    Shaw, MP
    Alphey, MS
    Hunter, WN
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2001, 57 : 755 - 758
  • [3] Structure of a functional IGF2R fragment determined from the anomalous scattering of sulfur
    Brown, J
    Esnouf, RM
    Jones, MA
    Linnell, J
    Harlos, K
    Hassan, AB
    Jones, EY
    [J]. EMBO JOURNAL, 2002, 21 (05) : 1054 - 1062
  • [4] CHEN P, 1992, J BIOL CHEM, V267, P1990
  • [5] Can anomalous signal of sulfur become a tool for solving protein crystal structures?
    Dauter, Z
    Dauter, M
    de La Fortelle, E
    Bricogne, G
    Sheldrick, GM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (01) : 83 - 92
  • [6] Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy
    Dauter, Z
    Adamiak, DA
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 : 990 - 995
  • [7] Dimeric crystal structure of a Bowman-Birk protease inhibitor from pea seeds
    de la Sierra, IL
    Quillien, L
    Flecker, P
    Gueguen, J
    Brunie, S
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 285 (03) : 1195 - 1207
  • [8] FLECKER P, 1993, PROTEINASE INHIBITOR, P161
  • [9] The C1 subunit of α-crustacyanin:: the de novo phasing of the crystal structure of a 40 kDa homodimeric protein using the anomalous scattering from S atoms combined with direct methods
    Gordon, EJ
    Leonard, GA
    McSweeney, S
    Zagalsky, PF
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2001, 57 : 1230 - 1237
  • [10] STRUCTURE OF THE HYDROPHOBIC PROTEIN CRAMBIN DETERMINED DIRECTLY FROM THE ANOMALOUS SCATTERING OF SULFUR
    HENDRICKSON, WA
    TEETER, MM
    [J]. NATURE, 1981, 290 (5802) : 107 - 113