Vienna RNA secondary structure server

被引:1698
作者
Hofacker, IL [1 ]
机构
[1] Univ Vienna, Inst Theoret Chem & Mol Strukturbiol, A-1090 Vienna, Austria
关键词
D O I
10.1093/nar/gkg599
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently offers prediction of secondary structure from a single sequence, prediction of the consensus secondary structure for a set of aligned sequences and the design of sequences that will fold into a predefined structure. All three services can be accessed via the Vienna RNA web server at http://rna.tbi.univie.ac.at/.
引用
收藏
页码:3429 / 3431
页数:3
相关论文
共 18 条
[1]  
[Anonymous], MATH METHODS DNA SEQ
[2]  
BRUCCOLERI RE, 1988, COMPUT APPL BIOSCI, V4, P167
[3]   Finding the most significant common sequence and structure motifs in a set of RNA sequences [J].
Gorodkin, J ;
Heyer, LJ ;
Stormo, GD .
NUCLEIC ACIDS RESEARCH, 1997, 25 (18) :3724-3732
[4]   FAST FOLDING AND COMPARISON OF RNA SECONDARY STRUCTURES [J].
HOFACKER, IL ;
FONTANA, W ;
STADLER, PF ;
BONHOEFFER, LS ;
TACKER, M ;
SCHUSTER, P .
MONATSHEFTE FUR CHEMIE, 1994, 125 (02) :167-188
[5]   Automatic detection of conserved RNA structure elements in complete RNA virus genomes [J].
Hofacker, IL ;
Fekete, M ;
Flamm, C ;
Huynen, MA ;
Rauscher, S ;
Stolorz, PE ;
Stadler, PF .
NUCLEIC ACIDS RESEARCH, 1998, 26 (16) :3825-3836
[6]   Secondary structure prediction for aligned RNA sequences [J].
Hofacker, IL ;
Fekete, M ;
Stadler, PF .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 319 (05) :1059-1066
[7]   RNA secondary structure prediction based on free energy and phylogenetic analysis [J].
Juan, V ;
Wilson, C .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (04) :935-947
[8]   RNA secondary structure prediction using stochastic context-free grammars and evolutionary history [J].
Knudsen, B ;
Hein, J .
BIOINFORMATICS, 1999, 15 (06) :446-454
[9]   ConStruct:: a tool for thermodynamic controlled prediction of conserved secondary structure [J].
Lück, R ;
Gräf, S ;
Steger, G .
NUCLEIC ACIDS RESEARCH, 1999, 27 (21) :4208-4217
[10]   Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure [J].
Mathews, DH ;
Sabina, J ;
Zuker, M ;
Turner, DH .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 288 (05) :911-940