About the efficiency of the early FOMs in ab initio protein phasing

被引:2
作者
Burla, MC
Caliandro, R
Carrozzini, B
Cascarano, GL
De Caro, L
Giacovazzo, C
Polidori, G
机构
[1] CNR, Ist Cristallog, I-70125 Bari, Italy
[2] Dipartimento Sci Terra, I-06100 Perugia, Italy
[3] Univ Bari, Dept Geomineral, I-70125 Bari, Italy
来源
JOURNAL OF APPLIED CRYSTALLOGRAPHY | 2004年 / 37卷
关键词
D O I
10.1107/S0021889804017583
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
All ab initio techniques for solving protein crystal structures use multisolution approaches. Several figures of merit that are found in the literature are efficient in the last steps of the phasing process, when some trials converge to the correct solution with a relatively small average phase error. Early figures of merit are much more critical; they should be able to recognize useful trials when the phase error is still large, and their efficiency determines the efficiency of the program. In the present work, a wide variety of known figures of merit at atomic and quasi-atomic ( similar to 1.4 Angstrom) resolution have been tested; new figures have also been devised and tested. Their application to a large set of test structures allows the study of their properties at different data resolutions and the selection of the most efficient figures within the SIR2003-N framework.
引用
收藏
页码:791 / 801
页数:11
相关论文
共 58 条
  • [1] Abramowitz M., 1970, HDB MATH FUNCTIONS
  • [2] A challenging case for protein crystal structure determination: The mating pheromone Er-1 from Euplotes raikovi
    Anderson, DH
    Weiss, MS
    Eisenberg, D
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 : 469 - 480
  • [3] Structure of a copper-mediated base pair in DNA
    Atwell, S
    Meggers, E
    Spraggon, G
    Schultz, PG
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (49) : 12364 - 12367
  • [4] Crystal structure of oxidized Bacillus pasteurii cytochrome c553 at 0.97-Å resolution
    Benini, S
    González, A
    Rypniewski, WR
    Wilson, KS
    Van Beeumen, JJ
    Ciurli, S
    [J]. BIOCHEMISTRY, 2000, 39 (43) : 13115 - 13126
  • [5] Atomic resolution structures of ribonuclease A at six pH values
    Berisio, R
    Sica, F
    Lamzin, VS
    Wilson, KS
    Zagari, A
    Mazzarella, L
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 : 441 - 450
  • [6] Ab initio protein phasing at 1.4 angstrom resolution: the new phasing approach of SIR2003-N
    Burla, MC
    Carrozzini, B
    Caliandro, R
    Cascarano, GL
    De Caro, L
    Giacovazzo, C
    Polidori, G
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2003, 59 : 560 - 568
  • [7] IMPROVED FIGURES OF MERIT FOR DIRECT METHODS
    CASCARANO, G
    GIACOVAZZO, C
    GUAGLIARDI, A
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1992, 48 : 859 - 865
  • [8] FIGURES OF MERIT IN DIRECT METHODS - A NEW POINT-OF-VIEW
    CASCARANO, G
    GIACOVAZZO, C
    VITERBO, D
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1987, 43 : 22 - 29
  • [9] RELATIONS BETWEEN THE PHASES OF STRUCTURE FACTORS
    COCHRAN, W
    [J]. ACTA CRYSTALLOGRAPHICA, 1955, 8 (08): : 473 - 478
  • [10] THE USE OF A HIGH-SPEED DIGITAL COMPUTER FOR THE DIRECT DETERMINATION OF CRYSTAL STRUCTURES .2.
    COCHRAN, W
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1957, 243 (1233): : 281 - 288