Bifurcation analysis of a model of the budding yeast cell cycle

被引:48
作者
Battogtokh, D [1 ]
Tyson, JJ [1 ]
机构
[1] Virginia Polytech Inst & State Univ, Dept Biol, Blacksburg, VA 24061 USA
关键词
D O I
10.1063/1.1780011
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
We study the bifurcations of a set of nine nonlinear ordinary differential equations that describe regulation of the cyclin-dependent kinase that triggers DNA synthesis and mitosis in the budding yeast, Saccharomyces cerevisiae. We show that Clb2-dependent kinase exhibits bistability (stable steady states of high or low kinase activity). The transition from low to high Clb2-dependent kinase activity is driven by transient activation of Cln2-dependent kinase, and the reverse transition is driven by transient activation of the Clb2 degradation machinery. We show that a four-variable model retains the main features of the nine-variable model. In a three-variable model exhibiting birhythmicity (two stable oscillatory states), we explore possible effects of extrinsic fluctuations on cell cycle progression. (C) 2004 American Institute of Physics.
引用
收藏
页码:653 / 661
页数:9
相关论文
共 38 条
[1]   A quantitative analysis of the kinetics of the G2 DNA damage checkpoint system [J].
Aguda, BD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) :11352-11357
[2]  
Alberts B., 1994, MOL BIOL CELL
[3]  
[Anonymous], 1998, AUTO 97 CONTINUATION
[4]   An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa [J].
Battogtokh, D ;
Asch, DK ;
Case, ME ;
Arnold, J ;
Schüttler, HB .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) :16904-16909
[5]  
BATTOGTOKH D, IN PRESS PHYS REV E
[6]   Bifurcation analysis of a model of mitotic control in frog eggs [J].
Borisuk, MT ;
Tyson, JJ .
JOURNAL OF THEORETICAL BIOLOGY, 1998, 195 (01) :69-85
[7]   Kinetic analysis of a molecular model of the budding yeast cell cycle [J].
Chen, KC ;
Csikasz-Nagy, A ;
Gyorffy, B ;
Val, J ;
Novak, B ;
Tyson, JJ .
MOLECULAR BIOLOGY OF THE CELL, 2000, 11 (01) :369-391
[8]   Testing a mathematical model of the yeast cell cycle [J].
Cross, FR ;
Archambault, V ;
Miller, M ;
Klovstad, M .
MOLECULAR BIOLOGY OF THE CELL, 2002, 13 (01) :52-70
[9]  
Fall C. P., 2002, Computational cell biology
[10]  
GARCIAOVAJO J, 1999, NOISE SPATIALLY EXTE