Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

被引：111

作者：

Kersey, P

Bower, L

Morris, L

Horne, A

Petryszak, R

Kanz, C

Kanapin, A

Das, U

Michoud, K

Phan, I

Gattiker, A

Kulikova, T

Faruque, N

Duggan, K

Mclaren, P

Reimhoiz, B

Duret, L

Penel, S

Reuter, I

Apweiler, R

机构：

[1] European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

[2] CMU, Swiss Inst Bioinformat, CH-1211 Geneva 4, Switzerland

[3] RZPD Deutsch Ressourcenzentrum Genom Forsch GmbH, D-14059 Berlin, Germany

[4] Univ Lyon 1, Lab Biometrie & Biol Evolut, CNRS, UMR 5558, F-69365 Lyon, France

[5] BIOBASE GmbH, D-38304 Wolfenbuttel, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2005年 / 33卷

关键词：

D O I：

10.1093/nar/gri039

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM. Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8.

引用

页码：D297 / D302

页数：6

共 29 条

[1] Apweiler R, 2004, NUCLEIC ACIDS RES, V32, pD115, DOI [10.1093/nar/gkw1099, 10.1093/nar/gkh131]
[2] GenBank: update
Benson, DA
Karsch-Mizrachi, I
Lipman, DJ
Ostell, J
Wheeler, DL
[J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D23 - D26
[3] Announcing the worldwide Protein Data Bank
Berman, H
Henrick, K
Nakamura, H
[J]. NATURE STRUCTURAL BIOLOGY, 2003, 10 (12) : 980 - 980
[4] Ensembl 2004
Birney, E
Andrews, D
Bevan, P
Caccamo, M
Cameron, G
Chen, Y
Clarke, L
Coates, G
Cox, T
Cuff, J
Curwen, V
Cutts, T
Down, T
Durbin, R
Eyras, E
Fernandez-Suarez, XM
Gane, P
Gibbins, B
Gilbert, J
Hammond, M
Hotz, H
Iyer, V
Kahari, A
Jekosch, K
Kasprzyk, A
Keefe, D
Keenan, S
Lehvaslaiho, H
McVicker, G
Melsopp, C
Meidl, P
Mongin, E
Pettett, R
Potter, S
Proctor, G
Rae, M
Searle, S
Slater, G
Smedley, D
Smith, J
Spooner, W
Stabenau, A
Stalker, J
Storey, R
Ureta-Vidal, A
Woodwark, C
Clamp, M
Hubbard, T
[J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D468 - D470
[5] E-MSD: the European Bioinformatics Institute Macromolecular Structure Database
Boutselakis, H
Dimitropoulos, D
Fillon, J
Golovin, A
Henrick, K
Hussain, A
Ionides, J
John, M
Keller, PA
Krissinel, E
McNeil, P
Naim, A
Newman, R
Oldfield, T
Pineda, J
Rachedi, A
Copeland, J
Sitnov, A
Sobhany, S
Suarez-Uruena, A
Swaminathan, J
Tagari, M
Tate, J
Tromm, S
Velankar, S
Vranken, W
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 458 - 462
[6] ArrayExpress - a public repository for microarray gene expression data at the EBI
Brazma, A
Parkinson, H
Sarkans, U
Shojatalab, M
Vilo, J
Abeygunawardena, N
Holloway, E
Kapushesky, M
Kemmeren, P
Lara, GG
Oezcimen, A
Rocca-Serra, P
Sansone, SA
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 68 - 71
[7] The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology
Camon, E
Magrane, M
Barrell, D
Lee, V
Dimmer, E
Maslen, J
Binns, D
Harte, N
Lopez, R
Apweiler, R
[J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D262 - D266
[8] The HSSP database of protein structure sequence alignments and family profiles
Dodge, C
Schneider, R
Sander, C
[J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 313 - 315
[9] Automated annotation of microbial proteomes in SWISS-PROT
Gattiker, A
Michoud, K
Rivoire, C
Auchincloss, AH
Coudert, E
Lima, T
Kersey, P
Pagni, M
Sigrist, CJA
Lachaize, C
Veuthey, AL
Gasteiger, E
Bairoch, A
[J]. COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2003, 27 (01) : 49 - 58
[10] The FlyBase database of the Drosophila genome projects and community literature
Gelbart, W
Bayraktaroglu, L
Bettencourt, B
Campbell, K
Crosby, M
Emmert, D
Hradecky, P
Huang, Y
Letovsky, S
Matthews, B
Russo, S
Schroeder, A
Smutniak, F
Zhou, P
Zytkovicz, M
Ashburner, M
Drysdale, R
de Grey, A
Foulger, R
Millburn, G
Yamada, C
Kaufman, T
Matthews, K
Gilbert, D
Grumbling, G
Strelets, V
Shemen, C
Rubin, G
Berman, B
Frise, E
Gibson, M
Harris, N
Kaminker, J
Lewis, S
Marshall, B
Misra, S
Mungall, C
Prochnik, S
Richter, J
Smith, C
Shu, S
Tupy, J
Wiel, C
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 172 - 175

← 1 2 3 →