Influence of temperature on the composition and activity of denitrifying soil communities

被引:154
作者
Braker, Gesche [1 ]
Schwarz, Julia [1 ]
Conrad, Ralf [1 ]
机构
[1] Max Planck Inst Terr Microbiol, D-35043 Marburg, Germany
关键词
denitrifiers; community composition; abundance; activity; temperature; NITRATE-RESPIRING BACTERIA; 16S RIBOSOMAL-RNA; NITROUS-OXIDE; NITRIC-OXIDE; FOREST SOIL; MICROBIAL COMMUNITY; CULTIVATED DENITRIFIERS; TERRESTRIAL ECOSYSTEM; ENVIRONMENTAL-SAMPLES; CYCLING COMMUNITIES;
D O I
10.1111/j.1574-6941.2010.00884.x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The impacts of temperature on the activity and on the size as well as on the community composition of denitrifiers in an agricultural soil were studied in a controlled laboratory experiment. Soil slurries were incubated at different temperatures (4, 15, 20, 25, and 37 degrees C) under nonlimiting substrate conditions for 3 weeks. The abundance of the nitrate-reducer community in general was determined using the most probable number (MPN) technique; denitrifier activity and community composition were assessed by measuring potential denitrifier enzyme activity and by terminal restriction fragment length polymorphisms as well as by phylogenetic analysis of nitrite reductase gene amplicons (nirK and nirS). Increasing incubation temperatures resulted in gradually enhanced denitrification activity, but also in higher abundance of nitrate reducers and in different denitrifier community compositions. Genetic and physiological characterization of isolates purified from the highest dilution of the MPN series emphasized community differences. Overall, temperature apparently not only affected process rates but also resulted in the enrichment of denitrifiers and shifts in the community composition.
引用
收藏
页码:134 / 148
页数:15
相关论文
共 72 条
[1]   PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION [J].
AMANN, RI ;
LUDWIG, W ;
SCHLEIFER, KH .
MICROBIOLOGICAL REVIEWS, 1995, 59 (01) :143-169
[2]   Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers [J].
Avrahami, S ;
Liesack, W ;
Conrad, R .
ENVIRONMENTAL MICROBIOLOGY, 2003, 5 (08) :691-705
[3]   N2O emission rates in a California meadow soil are influenced by fertilizer level, soil moisture and the community structure of ammonia-oxidizing bacteria [J].
Avrahami, Sharon ;
Bohannan, Brendan J. M. .
GLOBAL CHANGE BIOLOGY, 2009, 15 (03) :643-655
[4]   Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures [J].
Avrhami, S ;
Conrad, R .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (10) :6152-6164
[5]   Nitrification and denitrification as sources of atmospheric nitrous oxide -: role of oxidizable carbon and applied nitrogen [J].
Azam, F ;
Müller, C ;
Weiske, A ;
Benckiser, G ;
Ottow, JCG .
BIOLOGY AND FERTILITY OF SOILS, 2002, 35 (01) :54-61
[6]   EFFECTS OF TEMPERATURE AND ROOT ON DENITRIFICATION IN A SOIL [J].
BAILEY, LD .
CANADIAN JOURNAL OF SOIL SCIENCE, 1976, 56 (02) :79-87
[7]   Global change, nitrification, and denitrification: A review [J].
Barnard, R ;
Leadley, PW ;
Hungate, BA .
GLOBAL BIOGEOCHEMICAL CYCLES, 2005, 19 (01) :1-13
[8]   Reciprocal transfer effects on denitrifying community composition and activity at forest and meadow sites in the Cascade Mountains of Oregon [J].
Boyle, Stephanie A. ;
Rich, Jeremy J. ;
Bottomley, Peter J. ;
Cromack, Kermit, Jr. ;
Myrold, David D. .
SOIL BIOLOGY & BIOCHEMISTRY, 2006, 38 (05) :870-878
[9]  
Braker G, 1998, APPL ENVIRON MICROB, V64, P3769
[10]   Nitric oxide reductase (norB) genes from pure cultures and environmental samples [J].
Braker, G ;
Tiedjë, JM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (06) :3476-3483