Small Noncoding RNAs: Biogenesis, Function, and Emerging Significance in Toxicology

被引:75
作者
Choudhuri, Supratim [1 ,2 ]
机构
[1] US FDA, Ctr Food Safety & Appl Nutr, Div Biotechnol, College Pk, MD 20740 USA
[2] US FDA, GRAS Notice Review, College Pk, MD 20740 USA
关键词
miRNA; siRNA; piRNA; rasiRNA; DOUBLE-STRANDED-RNA; MESSENGER-RNA; MICRO-RNA; GENETIC INTERFERENCE; DISTINCT ROLES; RAT-LIVER; EXPRESSION; MECHANISMS; MIRNAS; DICER;
D O I
10.1002/jbt.20325
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In recent years, the discovery of small ncRNAs (noncoding RNAs) has unveiled a slew of powerful riboregulators of gene expression. So far, many different types of small ncRNAs have been described. Of these, miRNAs (microRNAs), siRNAs (small interfering RNAs), and piRNAs (Piwi-interacting RNAs) have been studied in more detail. A significant fraction of genes in most organisms and tissues is targets of these small ncRNAs. Because these tiny RNAs are turning out to be important regulators of gene and genome expression, their aberrant expression profiles are expected to be associated with cellular dysfunction and disease. In fact, an ever-increasing number of studies have implicated miRNAs and siRNAs in human health and disease ranging from metabolic disorders to diseases of various organ systems as well as various forms of cancer. Nevertheless, despite the flurry of research on these small ncRNAs, many aspects of their biology still remain to be understood. The following discussion focuses on some aspects of the biogenesis and function of small ncRNAs with major emphasis on miRNAs since these are the most widespread endogenous small ncRNAs that have been called "micromanagers" of gene expression. Their emerging significance in toxicology is also discussed. (C)2010 Wiley Periodicals, Inc. J Biochem Mol Toxicol 24:195-216,2010; Published online in Wiley InterScience (www.interscience.wiley.com). DOI10:1002/jbt.20325
引用
收藏
页码:195 / 216
页数:22
相关论文
共 103 条
[1]   Identification and characterization of small RNAs involved in RNA silencing [J].
Aravin, A ;
Tuschl, T .
FEBS LETTERS, 2005, 579 (26) :5830-5840
[2]   The small RNA profile during Drosophila melanogaster development [J].
Aravin, AA ;
Lagos-Quintana, M ;
Yalcin, A ;
Zavolan, M ;
Marks, D ;
Snyder, B ;
Gaasterland, T ;
Meyer, J ;
Tuschl, T .
DEVELOPMENTAL CELL, 2003, 5 (02) :337-350
[3]   A novel class of small RNAs bind to MILI protein in mouse testes [J].
Aravin, Alexei ;
Gaidatzis, Dimos ;
Pfeffer, Sebastien ;
Lagos-Quintana, Mariana ;
Landgraf, Pablo ;
Iovino, Nicola ;
Morris, Patricia ;
Brownstein, Michael J. ;
Kuramochi-Miyagawa, Satomi ;
Nakano, Toru ;
Chien, Minchen ;
Russo, James J. ;
Ju, Jingyue ;
Sheridan, Robert ;
Sander, Chris ;
Zavolan, Mihaela ;
Tuschl, Thomas .
NATURE, 2006, 442 (7099) :203-207
[4]   The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race [J].
Aravin, Alexei A. ;
Hannon, Gregory J. ;
Brennecke, Julius .
SCIENCE, 2007, 318 (5851) :761-764
[5]   Mammalian mirtron genes [J].
Berezikov, Eugene ;
Chung, Wei-Jen ;
Willis, Jason ;
Cuppen, Edwin ;
Lai, Eric C. .
MOLECULAR CELL, 2007, 28 (02) :328-336
[6]   Role for a bidentate ribonuclease in the initiation step of RNA interference [J].
Bernstein, E ;
Caudy, AA ;
Hammond, SM ;
Hannon, GJ .
NATURE, 2001, 409 (6818) :363-366
[7]   RNA polymerase III transcribes human microRNAs [J].
Borchert, Glen M. ;
Lanier, William ;
Davidson, Beverly L. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2006, 13 (12) :1097-1101
[8]  
Brennecke J, 2007, CELL, V128, P1089, DOI 10.1016/j.cell.2007.01.043
[9]   The diversity of RNA silencing pathways in plants [J].
Brodersen, Peter ;
Voinnet, Olivier .
TRENDS IN GENETICS, 2006, 22 (05) :268-280
[10]   The imprinted H19 noncoding RNA is a primary microRNA precursor [J].
Cai, Xuezhong ;
Cullen, Bryan R. .
RNA, 2007, 13 (03) :313-316