A radiation hybrid map of bovine chromosome 24 and comparative mapping with human chromosome 18

被引：7

作者：

Kurar, E

Womack, JE

Kirkpatrick, BW

机构：

[1] Univ Wisconsin, Dept Anim Sci, Madison, WI 53706 USA

[2] Texas A&M Univ, Inst Biosci & Technol, Dept Vet Pathobiol, College Stn, TX 77843 USA

[3] Texas A&M Univ, Inst Biosci & Technol, Ctr Anim Genet, College Stn, TX 77843 USA

来源：

ANIMAL GENETICS | 2003年 / 34卷 / 03期

关键词：

bovine chromosome 24; radiation hybrid map;

D O I：

10.1046/j.1365-2052.2003.00996.x

中图分类号：

S8 [畜牧、动物医学、狩猎、蚕、蜂];

学科分类号：

0905 ;

摘要：

We present herein a bovine chromosome 24 (BTA24) radiation hybrid (RH) map using 40 markers scored on a panel of 90 RHs. Of these markers, 29 loci were ordered with odds of at least 1000:1 in a framework map. An average retention frequency of 17.4% was observed, with relatively higher frequencies near the centromere. The length of the comprehensive map was 640 centiray(5000) (cR(5000) ) with an average marker interval of approximately 17.3 cR(5000) . The observed locus order is generally consistent with currently published bovine linkage and physical maps. Nineteen markers were either Type I loci or closely associated with expressed sequences and thus could be used to compare the BTA24 RH map with human mapping information. All genes located on BTA24 were located on human chromosome 18, and previously reported regions of conserved synteny were extended. The comparative data revealed the presence of at least six conserved regions between these chromosomes.

引用

页码：198 / 204

页数：7

共 28 条

[1] Comparative mapping in cattle of genes located on human Chromosome 18 [J].

Agaba, MK ;

Kemp, SJ ;

Barendse, W ;

Teale, A .

MAMMALIAN GENOME, 1997, 8 (07) :530-532

[2] An ordered comparative map of the cattle and human genomes [J].

Band, MR ;

Larson, JH ;

Rebeiz, M ;

Green, CA ;

Heyen, DW ;

Donovan, J ;

Windish, R ;

Steining, C ;

Mahyuddin, P ;

Womack, JE ;

Lewin, HA .

GENOME RESEARCH, 2000, 10 (09) :1359-1368

[3] A medium-density genetic linkage map of the bovine genome [J].

Barendse, W ;

Vaiman, D ;

Kemp, SJ ;

Sugimoto, Y ;

Armitage, SM ;

Williams, JL ;

Sun, HS ;

Eggen, A ;

Agaba, M ;

Aleyasin, SA ;

Band, M ;

Bishop, MD ;

Buitkamp, J ;

Byrne, K ;

Collins, F ;

Cooper, L ;

Coppettiers, W ;

Denys, B ;

Drinkwater, RD ;

Easterday, K ;

Elduque, C ;

Ennis, S ;

Erhardt, G ;

Ferretti, L ;

Flavin, N ;

Gao, Q ;

Georges, M ;

Gurung, R ;

Harlizius, B ;

Hawkins, G ;

Hetzel, J ;

Hirano, T ;

Hulme, D ;

Jorgensen, C ;

Kessler, M ;

Kirkpatrick, BW ;

Konfortov, B ;

Kostia, S ;

Kuhn, C ;

Lenstra, JA ;

Leveziel, H ;

Lewin, HA ;

Leyhe, B ;

Lil, L ;

Burriel, IM ;

McGraw, RA ;

Miller, JR ;

Moody, DE ;

Moore, SS ;

Nakane, S .

MAMMALIAN GENOME, 1997, 8 (01) :21-28

[4]

BOEHNKE M, 1991, AM J HUM GENET, V49, P1174

[5] Comparative analysis of the cattle and human genomes: Detection of ZOO-FISH and gene mapping-based chromosomal homologies [J].

Chowdhary, BP ;

Fronicke, L ;

Gustavsson, I ;

Scherthan, H .

MAMMALIAN GENOME, 1996, 7 (04) :297-302

[6] A physical map of 30,000 human genes [J].

Deloukas, P ;

Schuler, GD ;

Gyapay, G ;

Beasley, EM ;

Soderlund, C ;

Rodriguez-Tomé, P ;

Hui, L ;

Matise, TC ;

McKusick, KB ;

Beckmann, JS ;

Bentolila, S ;

Bihoreau, MT ;

Birren, BB ;

Browne, J ;

Butler, A ;

Castle, AB ;

Chiannilkulchai, N ;

Clee, C ;

Day, PJR ;

Dehejia, A ;

Dibling, T ;

Drouot, N ;

Duprat, S ;

Fizames, C ;

Fox, S ;

Gelling, S ;

Green, L ;

Harrison, P ;

Hocking, R ;

Holloway, E ;

Hunt, S ;

Keil, S ;

Lijnzaad, P ;

Louis-Dit-Sully, C ;

Ma, J ;

Mendis, A ;

Miller, J ;

Morissette, J ;

Muselet, D ;

Nusbaum, HC ;

Peck, A ;

Rozen, S ;

Simon, D ;

Slonim, DK ;

Staples, R ;

Stein, LD ;

Stewart, EA ;

Suchard, MA ;

Thangarajah, T ;

Vega-Czarny, N .

SCIENCE, 1998, 282 (5389) :744-746

[7] A radiation hybrid map of bovine Chromosome 7 and comparative mapping with human Chromosome 19 p arm [J].

Gu, ZX ;

Womack, JE ;

Kirkpatrick, BW .

MAMMALIAN GENOME, 1999, 10 (11) :1112-1114

[8] A radiation hybrid map of the human genome [J].

Gyapay, G ;

Schmitt, K ;

Fizames, C ;

Jones, H ;

VegaCzarny, N ;

Spillett, D ;

Muselet, D ;

PrudHomme, JF ;

Dib, C ;

Auffray, C ;

Morissette, J ;

Weissenbach, J ;

Goodfellow, PN .

HUMAN MOLECULAR GENETICS, 1996, 5 (03) :339-346

[9] CHROMOSOME PAINTING WITH HUMAN CHROMOSOME-SPECIFIC DNA LIBRARIES REVEALS THE EXTENT AND DISTRIBUTION OF CONSERVED SEGMENTS IN BOVINE CHROMOSOMES [J].

HAYES, H .

CYTOGENETICS AND CELL GENETICS, 1995, 71 (02) :168-174

[10] Radiation hybrid mapping of the zebrafish genome [J].

Hukriede, NA ;

Joly, L ;

Tsang, M ;

Miles, J ;

Tellis, P ;

Epstein, JA ;

Barbazuk, WB ;

Li, FN ;

Paw, B ;

Postlethwait, JH ;

Hudson, TJ ;

Zon, LI ;

McPherson, JD ;

Chevrette, M ;

Dawid, IB ;

Johnson, SL ;

Ekker, M .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (17) :9745-9750

← 1 2 3 →