Description of a novel HLA-B allele, B*5613, identified during HLA-typing using sequence-specific oligonucleotide hybridization and sequence-specific amplification

被引:5
作者
Hoppe, B
Heymann, GA
Schoenemann, C
Nagy, M
Kiesewetter, H
Salama, A
机构
[1] Charite Univ Med Berlin, Inst Transfus Med, D-13353 Berlin, Germany
[2] Charite Univ Med Berlin, Inst Legal Med, D-13353 Berlin, Germany
来源
TISSUE ANTIGENS | 2004年 / 64卷 / 05期
关键词
allele-specific amplification; DNA sequencing; SSO; SSP;
D O I
10.1111/j.1399-0039.2004.00306.x
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Here, we report on the characterization of a novel human leukocyte antigen (HLA)-B allele, B*5613. The allele was identified in an adult male from North Africa who was suffering from sickle cell anemia. HLA-B*5613 most closely matches to B*5601 differing only by a substitution of three nucleotides of codon 180. Due to this substitution, low-resolution HLA-typing using sequence-specific oligonucleotide hybridization or amplification using sequence-specific primers gave inconclusive results. DNA sequencing confirmed a variation of codon 180 (CTG-->GAC) resulting in an amino acid substitution Leu156Asp.
引用
收藏
页码:616 / 618
页数:3
相关论文
共 4 条
[1]   The structure of HLA-B8 complexed to an immunodominant viral determinant: Peptide-induced conformational changes and a mode of MHC class I dimerization [J].
Kjer-Nielsen, L ;
Clements, CS ;
Brooks, AG ;
Purcell, AW ;
Fontes, MR ;
McCluskey, J ;
Rossjohn, J .
JOURNAL OF IMMUNOLOGY, 2002, 169 (09) :5153-5160
[2]   The HLA-DRA*0102 allele: Correct nucleotide sequence and associated HLA haplotypes [J].
Kralovicova, J ;
Marsh, SGE ;
Waller, MJ ;
Hammarstrom, L ;
Vorechovsky, I .
TISSUE ANTIGENS, 2002, 60 (03) :266-267
[3]  
Robinson J, 2003, NUCLEIC ACIDS RES, V31, P311, DOI [10.1093/nar/gkg070, 10.1093/nar/GKG070]
[4]   RATIONAL DESIGN OF NONNATURAL PEPTIDES AS HIGH-AFFINITY LIGANDS FOR THE HLA-B-ASTERISK-2705 HUMAN-LEUKOCYTE ANTIGEN [J].
ROGNAN, D ;
SCAPOZZA, L ;
FOLKERS, G ;
DASER, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (03) :753-757