Positional cloning in arabidopsis. Why it feels good to have a genome initiative working for you

被引:390
作者
Lukowitz, W
Gillmor, CS
Scheible, WR
机构
[1] Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA
[2] Stanford Univ, Dept Biol Sci, Stanford, CA 94305 USA
关键词
D O I
10.1104/pp.123.3.795
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Positional (or map-based) cloning techniques are widely used to identify the protein products of genes defined by mutation. In Arabidopsis the information generated by the Genome Initiative is giving this approach a decisive boost. A wealth of sequence polymorphisms and molecular markers is now available and can be exploited for fine mapping with technically simple and robust polymerase chain reaction-based methods. As a result it has become possible to complete positional cloning projects in a short time and with relatively little effort.
引用
收藏
页码:795 / 805
页数:11
相关论文
共 51 条
[1]   Naturally occurring variation in Arabidopsis:: an underexploited resource for plant genetics [J].
Alonso-Blanco, C ;
Koornneef, M .
TRENDS IN PLANT SCIENCE, 2000, 5 (01) :22-29
[2]   ASSIGNMENT OF 30 MICROSATELLITE LOCI TO THE LINKAGE MAP OF ARABIDOPSIS [J].
BELL, CJ ;
ECKER, JR .
GENOMICS, 1994, 19 (01) :137-144
[3]  
Busch M, 1996, MOL GEN GENET, V250, P681, DOI 10.1007/s004380050121
[4]   RESTRICTION FRAGMENT LENGTH POLYMORPHISM LINKAGE MAP FOR ARABIDOPSIS-THALIANA [J].
CHANG, C ;
BOWMAN, JL ;
DEJOHN, AW ;
LANDER, ES ;
MEYEROWITZ, EM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (18) :6856-6860
[5]   The Arabidopsis thaliana AGRAVITROPIC 1 gene encodes a component of the polar-auxin-transport efflux carrier [J].
Chen, RJ ;
Hilson, P ;
Sedbrook, J ;
Rosen, E ;
Caspar, T ;
Masson, PH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :15112-15117
[6]   Genome-wide mapping with biallelic markers in Arabidopsis thaliana [J].
Cho, RJ ;
Mindrinos, M ;
Richards, DR ;
Sapolsky, RJ ;
Anderson, M ;
Drenkard, E ;
Dewdney, L ;
Reuber, TL ;
Stammers, M ;
Federspiel, N ;
Theologis, A ;
Yang, WH ;
Hubbell, E ;
Au, M ;
Chung, EY ;
Lashkari, D ;
Lemieux, B ;
Dean, C ;
Lipshutz, RJ ;
Ausubel, FM ;
Davis, RW ;
Oefner, PJ .
NATURE GENETICS, 1999, 23 (02) :203-207
[7]   Assaying genome-wide recombination and centromere functions with Arabidopsis tetrads [J].
Copenhaver, GP ;
Browne, WE ;
Preuss, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (01) :247-252
[8]   Genetic definition and sequence analysis of Arabidopsis centromeres [J].
Copenhaver, GP ;
Nickel, K ;
Kuromori, T ;
Benito, MI ;
Kaul, S ;
Lin, XY ;
Bevan, M ;
Murphy, G ;
Harris, B ;
Parnell, LD ;
McCombie, WR ;
Martienssen, RA ;
Marra, M ;
Preuss, D .
SCIENCE, 1999, 286 (5449) :2468-2474
[9]   T-DNA INSERTION MUTAGENESIS IN ARABIDOPSIS - MUTATIONAL SPECTRUM [J].
FELDMANN, KA .
PLANT JOURNAL, 1991, 1 (01) :71-82
[10]   Genetic similarity among Arabidopsis thaliana ecotypes estimated by DNA sequence comparison [J].
Hardtke, CS ;
Muller, J ;
Berleth, T .
PLANT MOLECULAR BIOLOGY, 1996, 32 (05) :915-922