Influence of experimental errors on the determination of flux control coefficients from transient metabolic concentrations

被引:11
作者
Ehlde, M
Zacchi, G
机构
[1] Department of Chemical Engineering 1, University of Lund, S-221 00 Lund
关键词
D O I
10.1042/bj3130721
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The influence of experimental errors on the determination of flux control coefficients from transient metabolite concentrations with the method proposed by Delgado and Liao [(1992) Biochem. J. 282, 919-927] has been investigated by using Monte Carlo simulations. The method requires least-squares fitting of the transient metabolite concentrations. Three different fitting methods have been evaluated. Simulated metabolite concentrations of a fictive metabolic pathway were scattered randomly, emulating experimental errors, before performing the fits. This was repeated a large number of times; the mean values and standard deviations of the resulting control coefficients are reported. The results show that the proposed method for determining control coefficients is too sensitive to experimental errors to be practicable, with theoretically justified fitting methods. This is in particular due to the high degree of correlation between the concentrations. An alternative ad hoc fitting method produced biased mean values of the estimates of the control coefficients, but with remarkably low standard deviations.
引用
收藏
页码:721 / 727
页数:7
相关论文
共 10 条
[1]  
[Anonymous], 1992, NUMERICAL RECIPES
[2]   METABOLIC CONTROL ANALYSIS USING TRANSIENT METABOLITE CONCENTRATIONS - DETERMINATION OF METABOLITE CONCENTRATION CONTROL COEFFICIENTS [J].
DELGADO, J ;
LIAO, JC .
BIOCHEMICAL JOURNAL, 1992, 285 :965-972
[3]   DETERMINATION OF FLUX CONTROL COEFFICIENTS FROM TRANSIENT METABOLITE CONCENTRATIONS [J].
DELGADO, J ;
LIAO, JC .
BIOCHEMICAL JOURNAL, 1992, 282 :919-927
[4]   IDENTIFYING RATE-CONTROLLING ENZYMES IN METABOLIC PATHWAYS WITHOUT KINETIC-PARAMETERS [J].
DELGADO, JP ;
LIAO, JC .
BIOTECHNOLOGY PROGRESS, 1991, 7 (01) :15-20
[5]  
EHLDE M, 1995, COMPUT APPL BIOSCI, V11, P201
[6]   METABOLIC CONTROL ANALYSIS - A SURVEY OF ITS THEORETICAL AND EXPERIMENTAL DEVELOPMENT [J].
FELL, DA .
BIOCHEMICAL JOURNAL, 1992, 286 :313-330
[7]   LINEAR STEADY-STATE TREATMENT OF ENZYMATIC CHAINS - GENERAL PROPERTIES, CONTROL AND EFFECTOR STRENGTH [J].
HEINRICH, R ;
RAPOPORT, TA .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1974, 42 (01) :89-95
[8]   METHOD OF LEAST-SQUARES [J].
JEFFERYS, WH .
ASTRONOMICAL JOURNAL, 1980, 85 (02) :177-181
[9]  
Kacser H, 1973, Symp Soc Exp Biol, V27, P65
[10]   A BETTER LEAST-SQUARES METHOD WHEN BOTH VARIABLES HAVE UNCERTAINTIES [J].
LYBANON, M .
AMERICAN JOURNAL OF PHYSICS, 1984, 52 (01) :22-26