Perturbation approach to combined QM/MM simulation of solute-solvent interactions in solution

被引:23
作者
Cubero, E
Luque, FJ
Orozco, M
Gao, JL
机构
[1] Univ Barcelona, Fac Farm, Dept Fisicoquim, E-08028 Barcelona, Spain
[2] Univ Barcelona, Fac Quim, Dept Bioquim, E-08028 Barcelona, Spain
[3] Univ Minnesota, Minnesota Supercomp Inst, Minneapolis, MN 55455 USA
[4] Univ Minnesota, Dept Chem, Minneapolis, MN 55455 USA
关键词
D O I
10.1021/jp026874k
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A perturbation approach based on the generalized molecular interaction potential with polarization (GMIPp) has been developed for combined quantum mechanical and molecular mechanical (QM/MM) simulations of solutions. A unique feature of the method is to avoid repeated self-consistent field calculations for each new solvent configuration during the fluid simulation. The results show that the GMIPp potential coupled to Monte Carlo simulations yields similar energetic and structural results for a series of 14 organic compounds in aqueous solution in comparison with the results obtained from full ab initio QM/MM simulations at the HF/6-31G(d) level. Importantly, the solute electronic polarization energy is reasonably estimated by the GMIPp method. The implementation of the GMIPp within the Monte Carlo Simulation framework appear to be a promising computational strategy for carrying out QM/MM calculation,, for large molecule, which otherwise would be difficult by using standard QM/MM techniques.
引用
收藏
页码:1664 / 1671
页数:8
相关论文
共 42 条
[1]   MOLECULAR SOLVATION POTENTIAL - A NEW TOOL FOR THE QUANTUM-MECHANICAL DESCRIPTION OF HYDRATION IN ORGANIC AND BIOORGANIC MOLECULES [J].
ALHAMBRA, C ;
LUQUE, FJ ;
OROZCO, M .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (10) :3084-3092
[2]   Quantum dynamics of hydride transfer in enzyme catalysis [J].
Alhambra, C ;
Corchado, JC ;
Sánchez, ML ;
Gao, JL ;
Truhlar, DG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (34) :8197-8203
[3]   Fast evaluation of induction energies: a second-order perturbation theory approach [J].
Chipot, C ;
Luque, FJ .
CHEMICAL PHYSICS LETTERS, 2000, 332 (1-2) :190-198
[4]   POLARIZATION OF THE NUCLEIC-ACID BASES IN AQUEOUS-SOLUTION [J].
CRAMER, CJ ;
TRUHLAR, DG .
CHEMICAL PHYSICS LETTERS, 1992, 198 (1-2) :74-80
[5]   AN SCF SOLVATION MODEL FOR THE HYDROPHOBIC EFFECT AND ABSOLUTE FREE-ENERGIES OF AQUEOUS SOLVATION [J].
CRAMER, CJ ;
TRUHLAR, DG .
SCIENCE, 1992, 256 (5054) :213-217
[6]   Is polarization important in cation-π interactions? [J].
Cubero, E ;
Luque, FJ ;
Orozco, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :5976-5980
[7]   A QM/MM implementation of the self-consistent charge density functional tight binding (SCC-DFTB) method [J].
Cui, Q ;
Elstner, M ;
Kaxiras, E ;
Frauenheim, T ;
Karplus, M .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (02) :569-585
[8]   Quantum mechanics/molecular mechanics studies of triosephosphate isomerase-catalyzed reactions: Effect of geometry and tunneling on proton-transfer rate constants [J].
Cui, Q ;
Karplus, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (12) :3093-3124
[9]  
DEVIKESAVAN LS, 2003, IN PRESS THEOR CHEM
[10]   SOLVENT EFFECTS ON THE BARRIER TO ISOMERIZATION FOR A TERTIARY AMIDE FROM ABINITIO AND MONTE-CARLO CALCULATIONS [J].
DUFFY, EM ;
SEVERANCE, DL ;
JORGENSEN, WL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (19) :7535-7542