The 4C technique:: the 'Rosetta stone' for genome biology in 3D?

被引:20
作者
Ohlsson, Rolf [1 ]
Gondor, Anita [1 ]
机构
[1] Uppsala Univ, Evolut Biol Ctr, Dept Genet & Dev, S-75236 Uppsala, Sweden
关键词
D O I
10.1016/j.ceb.2007.04.008
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Despite considerable efforts, the spatial link between the nuclear architecture and the genome remains enigmatic. The 4C method, independently innovated in four different laboratories, might in combination with other methods change that. As this method is based on the unbiased identification of sequences interacting with specific baits, there are unique opportunities for unravelling the secrets of how the genome functions in 3D.
引用
收藏
页码:321 / 325
页数:5
相关论文
共 18 条
[1]  
Bacher CP, 2006, NAT CELL BIOL, V8, P293, DOI 10.1038/ncb1365
[2]   Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization [J].
Bystricky, K ;
Laroche, T ;
van Houwe, G ;
Blaszczyk, M ;
Gasser, SM .
JOURNAL OF CELL BIOLOGY, 2005, 168 (03) :375-387
[3]   SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes [J].
Cai, Shutao ;
Lee, Charles C. ;
Kohwi-Shigematsu, Terumi .
NATURE GENETICS, 2006, 38 (11) :1278-1288
[4]   Capturing chromosome conformation [J].
Dekker, J ;
Rippe, K ;
Dekker, M ;
Kleckner, N .
SCIENCE, 2002, 295 (5558) :1306-1311
[5]  
DELAAT W, 2007, IN PRESS CURR OPIN C
[6]   Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements [J].
Dostie, Josee ;
Richmond, Todd A. ;
Arnaout, Ramy A. ;
Selzer, Rebecca R. ;
Lee, William L. ;
Honan, Tracey A. ;
Rubio, Eric D. ;
Krumm, Anton ;
Lamb, Justin ;
Nusbaum, Chad ;
Green, Roland D. ;
Dekker, Job .
GENOME RESEARCH, 2006, 16 (10) :1299-1309
[7]   The epigenetic progenitor origin of human cancer [J].
Feinberg, AP ;
Ohlsson, R ;
Henikoff, S .
NATURE REVIEWS GENETICS, 2006, 7 (01) :21-33
[8]   Transcriptional control thrown for a loop [J].
Fraser, Peter .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2006, 16 (05) :490-495
[9]   CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2 [J].
Kurukuti, Sreenivasulu ;
Tiwari, Vijay Kumar ;
Tavoosidana, Gholamreza ;
Pugacheva, Elena ;
Murrell, Adele ;
Zhao, Zhihu ;
Lobanenkov, Victor ;
Reik, Wolf ;
Ohlsson, Rolf .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (28) :10684-10689
[10]   CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1 [J].
Ling, JQ ;
Li, T ;
Hu, JF ;
Vu, TH ;
Chen, HL ;
Qiu, XW ;
Cherry, AM ;
Hoffman, AR .
SCIENCE, 2006, 312 (5771) :269-272